Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0501 ATGGCTTCTCTATTTAAGGATTTATCTAAGTTGTCAGCATATAGAGACAGAAGGTTTCCTGGAACACAAGAGGAATTTGAACATGCACTCGAGACATCAACGACACTTTATGTGGGCAATATGTCCTTTTACACAACAGAGGAGCAAGTTTATGAACTTTTTTCCCGAGCTggagaaataaagaaaataattatgggCTTGGATAAGAACACGAAAACACCCTGcggcttttgttttgttttATATTACTCTCGTGAAGATACTGGGGATGCTGTCAAATACATAAGTGGAACAATACTTGATGATCGTCCTATTCGTGTGGATTTTGACTGGGGATTCCAGGAAGGCAGGCAATGGGGCCGTGGTCGTAGTGGTGGCCAGGTGCGAGATGAATATCGGACTGATTACGACCCTGGTAGAGGTGGTTATGGGAAATTAGTCCAAAAAGAGTTAGAAGCACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGCTCCTATCCACCTGTTATGCCACCTTCCTATGGTAGACATGGTGGAGGCCATGGTCATGATTACTACAGGAAGAGACACAGAGATGATGATCGCCACACACACGAGTCCTCGAAAAGATCATCAGATCATGAATCTAGGAGAAACTCTGATCATGACTCTCGACCGGAAAAAAATCCTCGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGACGATGATCGGAAACGAAGAAACTAG 738 0.4187 MASLFKDLSKLSAYRDRRFPGTQEEFEHALETSTTLYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTGDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGAGSLGSYPPVMPPSYGRHGGGHGHDYYRKRHRDDDRHTHESSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKRRN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0501 245 CDD RRM_NCBP2 36 113 IPR034148 -
Sto7g0501 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Sto7g0501 245 MobiDBLite consensus disorder prediction 187 245 - -
Sto7g0501 245 MobiDBLite consensus disorder prediction 164 245 - -
Sto7g0501 245 SMART rrm1_1 35 108 IPR000504 GO:0003723
Sto7g0501 245 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Sto7g0501 245 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 207 - -
Sto7g0501 245 MobiDBLite consensus disorder prediction 124 138 - -
Sto7g0501 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Sto7g0501 245 Gene3D - 6 150 IPR012677 -
Sto7g0501 245 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 207 IPR027157 GO:0000339|GO:0005846|GO:0045292
Sto7g0501 245 MobiDBLite consensus disorder prediction 120 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0501 Sto-Chr7 3687622 3690898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0501 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 2.16e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0501 K12883 - gmx:100776217 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0501 7 3687622 3690898 Sto7g0501 7 3687622 3690898 ECH