Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0263 ATGACCCCACAGAGAATTCCAAAGGAGTTCATAAGAAGATTTGGGAGTGACCTGTCAAGTGAGGCAACAATTACAGTTCCAGACAAGCTTATTTGGAAGATGAGATTGAAGAAATTCCGCGAGGAGGTTTGGTTTTGCGACGGTTGGAAAGAATTTGTAAAATACTACTCCATTAGCTATGGCTTCTTCTTAATGTTCAAATATGAAGGCAATTCAAACTTCAGTGTGGTTATATTTGATATGAGTGCTTCTGAGATTTACTATCCATGCAAGAATGAGGAACCTAACTTTGATCACCCTGGATATGACACAAGGAGCAGAAGGCAAAATCAAGAAAGCCAAGAAGAAATAATTGATGtagaagatgtgaatgcaatgagTCATCATGGCAATTCAGGAGAAAACACAAGTGATGATAATAATCCTCATGAGCATTCAAGAAAAAATGGGAAAGATAGATCTAGGCAAAGGGCCATCAAAGCCGCCGAGAAGTTCAAGCCGAAAAATCCTTCTTTCACTGCACTAGTAAGGCGATCCAATTTGACTCATCTTTATATGAATGTCCCGGCTTCATTCGCTCAGACATATATGAGGAAACTTGATTCTGTGGAGATGGAGGATTCCGGTGGACAACGGTGGGCGGCTCCATGTCATAGACACGGTAACTCGGTGCGAATGAACAAGGGTTGGAGTGGTTTTGCAAGGACCAACAATGTGAGGGAAGgagatgtgtgtgtgtttgagcTTGTGAAGAGGAAGAACAATGTTGTACAAAAGTTACCATATTTTGTGGGGCTTGAATTTGGCAACTTGTGCAGGAATGACATCACACAGCGATTCCAAATGAGGTCCAACTCAAGGAGTCGCCGGAGAAGCTATGTCCGGCCATCGGTTTCTCCGTCTAATGCTGAACCCAACCACTTCTTGAAGATCATACTTCCCGGAGCCATTCACCTCGAAAAATTGAGAATTCCAAGGGAATTTTTAAGAAGATTCGGGAATGATTTATCCAATGAGGTAATGATTACTGTTCCAGACGGTCTTGTTTGGAAAATGGGATTGGAGAAATCTGCTAACGAAGTCTGGTTTTGCAACCATTGGCAAGAATTTTCGAAGTACTACTCTATTAGTTATGGCTCTTTCTTGATCTTCAAATATGTGGGGAATTCAAATTTCTGTGTGGTTATAATTGATATGAGTTCTGCTGAGATCTACTATCCATGCAAGAATCAGAGTAACAATGAGGAACAAGAAGAAATAATCTGTGTAGATGATGCGAATGCACCGAGTCATGGCAAATCCGGAACGAGTGTAAGTTATAATCCTAGGCCGCGACCGCGAGGCAATGCTTCCACCAAGGAGAATTTGTTGAGAAAAAAGCAAAGTGCTATAGAAGCTGCTCAAAAGTTTAAGCCAAAAAATCCTTCTTTCACTGTAATATTAAGGCCAACTAATGTGTCTTATTATCTGAATGTGCCTGCTTCATTTTCTAGAACATATATGAGGAAACCTTCTTGTGTGAAACTCCAGGACTCTAATGGACAACAGTGGGTGGTTAGTTGTTATCGGGATCACGGCTCAGTCATGCGAATGTCGAAGGGTTGGATCAATTTCGCAAGGGCCAAAAATCTTAGAGAAGgagatgtgtgtgtgtttgagcTTATCGAGAGGAAGAAAATTGTATTAAAAGTCACCATATTTCCCTGGACTTAA 1713 0.3952 MTPQRIPKEFIRRFGSDLSSEATITVPDKLIWKMRLKKFREEVWFCDGWKEFVKYYSISYGFFLMFKYEGNSNFSVVIFDMSASEIYYPCKNEEPNFDHPGYDTRSRRQNQESQEEIIDVEDVNAMSHHGNSGENTSDDNNPHEHSRKNGKDRSRQRAIKAAEKFKPKNPSFTALVRRSNLTHLYMNVPASFAQTYMRKLDSVEMEDSGGQRWAAPCHRHGNSVRMNKGWSGFARTNNVREGDVCVFELVKRKNNVVQKLPYFVGLEFGNLCRNDITQRFQMRSNSRSRRRSYVRPSVSPSNAEPNHFLKIILPGAIHLEKLRIPREFLRRFGNDLSNEVMITVPDGLVWKMGLEKSANEVWFCNHWQEFSKYYSISYGSFLIFKYVGNSNFCVVIIDMSSAEIYYPCKNQSNNEEQEEIICVDDANAPSHGKSGTSVSYNPRPRPRGNASTKENLLRKKQSAIEAAQKFKPKNPSFTVILRPTNVSYYLNVPASFSRTYMRKPSCVKLQDSNGQQWVVSCYRDHGSVMRMSKGWINFARAKNLREGDVCVFELIERKKIVLKVTIFPWT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0263 570 Gene3D - 457 569 IPR015300 -
Sto7g0263 570 Gene3D - 151 260 IPR015300 -
Sto7g0263 570 ProSiteProfiles B3 DNA-binding domain profile. 171 270 IPR003340 GO:0003677
Sto7g0263 570 SUPERFAMILY DNA-binding pseudobarrel domain 470 568 IPR015300 -
Sto7g0263 570 CDD B3_DNA 170 255 IPR003340 GO:0003677
Sto7g0263 570 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 4 258 - -
Sto7g0263 570 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 299 567 - -
Sto7g0263 570 CDD B3_DNA 307 398 IPR003340 GO:0003677
Sto7g0263 570 SMART B3_2 172 263 IPR003340 GO:0003677
Sto7g0263 570 SMART B3_2 477 570 IPR003340 GO:0003677
Sto7g0263 570 SMART B3_2 1 82 IPR003340 GO:0003677
Sto7g0263 570 SMART B3_2 308 400 IPR003340 GO:0003677
Sto7g0263 570 SUPERFAMILY DNA-binding pseudobarrel domain 165 258 IPR015300 -
Sto7g0263 570 ProSiteProfiles B3 DNA-binding domain profile. 307 400 IPR003340 GO:0003677
Sto7g0263 570 MobiDBLite consensus disorder prediction 428 454 - -
Sto7g0263 570 MobiDBLite consensus disorder prediction 282 302 - -
Sto7g0263 570 PANTHER B3 DOMAIN-CONTAINING 299 567 - -
Sto7g0263 570 PANTHER B3 DOMAIN-CONTAINING 4 258 - -
Sto7g0263 570 MobiDBLite consensus disorder prediction 97 115 - -
Sto7g0263 570 CDD B3_DNA 5 80 IPR003340 GO:0003677
Sto7g0263 570 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Sto7g0263 570 SUPERFAMILY DNA-binding pseudobarrel domain 302 399 IPR015300 -
Sto7g0263 570 MobiDBLite consensus disorder prediction 138 157 - -
Sto7g0263 570 CDD B3_DNA 475 568 IPR003340 GO:0003677
Sto7g0263 570 ProSiteProfiles B3 DNA-binding domain profile. 475 570 IPR003340 GO:0003677
Sto7g0263 570 MobiDBLite consensus disorder prediction 97 157 - -
Sto7g0263 570 MobiDBLite consensus disorder prediction 430 448 - -
Sto7g0263 570 Gene3D - 2 83 IPR015300 -
Sto7g0263 570 Gene3D - 300 401 IPR015300 -
Sto7g0263 570 SUPERFAMILY DNA-binding pseudobarrel domain 5 82 IPR015300 -
Sto7g0263 570 Pfam B3 DNA binding domain 317 398 IPR003340 GO:0003677
Sto7g0263 570 Pfam B3 DNA binding domain 487 567 IPR003340 GO:0003677
Sto7g0263 570 Pfam B3 DNA binding domain 5 80 IPR003340 GO:0003677
Sto7g0263 570 Pfam B3 DNA binding domain 172 255 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0263 Sto-Chr7 1861251 1866045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0263 5 88 B3 DNA Binding Superfamily AT3G18990 50.000 2.12e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto7g0263 B3 1.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0263 - - jre:109012471 345.125