Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0234 ATGGAGGCCAAGAGTATTGAGAGGAAGCAAGCATCCAATCATGAGAAGTCAAGAAAGGATAAAAGGACAGAAGAAgtagatgatgaagaagaagaggaggatgaAAGGGGTGGTAAGAGTGGAAGAAGAGGGTCAAGTGTGGTTGGTGGAGTTTCTTCTTCACTTTACTGTCAAGCAGAGAGATGTGGGGCTGATTTGAACAGTTCAAAGAGATACCATCGCCGCCACAAGGTGTGTGAGTTTCACTCCAAAGCACCTATTGTAATGGTTTCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGGGGAATTTgatgaagccaagagaagctgCCGGAGGCGGTTGGCCGAGCACAATGAGCGGCGAAGGAAAAGCTTTGCTGAAAACTACAATGAGGGTAGCAGCAAAGGCCATAATCATAACTCAATGGAAGGTCGCTACAACAAACATGTTGTTGATGAGAGGGGAAGAAGGGTTCATCATCAGATGAGCATGAAACTCAAGTGA 525 0.4248 MEAKSIERKQASNHEKSRKDKRTEEVDDEEEEEDERGGKSGRRGSSVVGGVSSSLYCQAERCGADLNSSKRYHRRHKVCEFHSKAPIVMVSGLRQRFCQQCSRFHELGEFDEAKRSCRRRLAEHNERRRKSFAENYNEGSSKGHNHNSMEGRYNKHVVDERGRRVHHQMSMKLK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0234 174 Gene3D - 48 118 IPR036893 GO:0003677|GO:0005634
Sto7g0234 174 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Sto7g0234 174 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Sto7g0234 174 MobiDBLite consensus disorder prediction 1 25 - -
Sto7g0234 174 MobiDBLite consensus disorder prediction 1 47 - -
Sto7g0234 174 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 147 IPR044817 GO:0003677
Sto7g0234 174 Pfam SBP domain 57 130 IPR004333 GO:0003677
Sto7g0234 174 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 147 - -
Sto7g0234 174 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0234 Sto-Chr7 1676155 1676762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0234 50 134 SBP-box Gene Family AT2G33810 70.588 2.57e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto7g0234 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0234 - - aprc:113864686 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0234 7 1676155 1676762 Sto4g2841 4 29159672 29160783 ECH
Sto7g0509 7 3757882 3758407 Sto7g0234 7 1676155 1676762 ECH
Sto7g0234 7 1676155 1676762 Sto13g2203 13 28885112 28897927 ECH
Sto7g0234 7 1676155 1676762 Sto7g0234 7 1676155 1676762 ECH