Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0229 ATGGCTCCTAGACCCATTTCCGTCGGATCCAACCCGACCCACGCCGCCAAGGAAATCCGCTACAGAGGCGTCAGGAAGCGCCCCTGGGGGCGTTACGCCGCCGAGATCCGTGATCCGGGGAAGAAGACCCGCGTCTGGCTCGGCACTTTTGACACAGCTGAGGAGGCGGCGCGTGCGTACGACGCGGCTGCAAGGGAGTTCCGTGGTGCCAAGGCCAAGACCAATTTCCCCACTCCATCTGAGCTTATAAACAACTCCACCCGTAGTCCTAGCCAGAGCAGCACCCTCGACTCTTCCTCTCCGCCGCCGCTAGACCTCACCCTCACCCCACTCGCCGTTGGCGGCGGAGCGATGGGCTTCCCGGTGATACCCGTGGCTCGCCCCGTCCTATTCTTCGATGCGTTTGCAAGGGCAGAGGGCATGAGAAGCGTTGGCCGCCGGGAGATGTGTGGATTCGATCTCCCCGTGACTGAATTCCGCCGCGCTGTGGGCGGTGCCCAGAGTGACTCCGATTCGTCCTCCGTCGTGGACTACGAGCGTGCTCCTCGGCTTCTAGATCTTGACCTTAACGTTGCTCCTCCACCAGAGGCGGCACCGACGGCGATAACGCTGGgtgtggagagagagagagagatgtggGGACCACATATGCATTTGCGTGTTGACTATGCAGCTGTCGGAGTTCATGTTGTCTTCACGTGA 702 0.5926 MAPRPISVGSNPTHAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSELINNSTRSPSQSSTLDSSSPPPLDLTLTPLAVGGGAMGFPVIPVARPVLFFDAFARAEGMRSVGRREMCGFDLPVTEFRRAVGGAQSDSDSSSVVDYERAPRLLDLDLNVAPPPEAAPTAITLGVEREREMWGPHMHLRVDYAAVGVHVVFT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0229 233 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Sto7g0229 233 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Sto7g0229 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 187 - -
Sto7g0229 233 PANTHER ERF FAMILY PROTEIN 1 187 - -
Sto7g0229 233 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Sto7g0229 233 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Sto7g0229 233 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Sto7g0229 233 MobiDBLite consensus disorder prediction 71 104 - -
Sto7g0229 233 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Sto7g0229 233 MobiDBLite consensus disorder prediction 77 104 - -
Sto7g0229 233 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Sto7g0229 233 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0229 Sto-Chr7 1637458 1639289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0229 1 146 AP2-EREBP Transcription Factor Family AT3G15210 58.182 5.49e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto7g0229 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0229 K09286 - gmx:100500601 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0229 7 1637458 1639289 Sto4g2831 4 29105253 29106425 ECH
Sto12g0667 12 4219122 4219784 Sto7g0229 7 1637458 1639289 ECH
Sto7g0229 7 1637458 1639289 Sto13g2193 13 28820348 28823362 ECH
Sto7g0229 7 1637458 1639289 Sto7g0229 7 1637458 1639289 ECH