Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0223 ATGGAAGATTTCTTCTTGTCATTCCAAAGCCAGAAGAAACACCCAGAAAAGCACAACAACAAGAAGAGGCTCACTGAAGATCAAGTGTCCATCCTAGAGAAAAACTTTGCTTGCAACAAGAAGCTTGAATCAGAGCAGAAGTTGCAGCTGTCAAACCAACTGGGTGTGCCTCCAAGACAGATTGCCATATGGTACCAGAACAAACGAGCTCGGTGGAAGACACAGAGTCTTGAGGAGGAGTATGGTGCCTTGCAGATAAAGGTAGAGATTGTGATGGCTGAGAAGAAGCAGCTTGAGAGAGATGTGGAAAGGCTCAAGGCAGAGCTGAAAGAGGCCAAAGAGATGGTGCATTTCATGAAAGGTGGAGGAGGACACCATAAGAATTGGTGTTTTGGTGAGTTTTCAACATCTTGTGAAGAGGTCATGCAGGATACCCGAAGGGTTATTGGTTTGATGAAGGAAATTGCCGTTGATTTGGAGAAAGACATGCAGTCTGATATGGTGAAAAACCTTGAAGATTCAGTTGCTGAGTTACTGGACGTATCTGAAGATTTTGCACATTTTTCATCAGCAGTTCAGTCTGTCGCTGACAAATACCAGCCAGGAGAAGAGTTAACTGACTTTAAGAAGTTGTTTGAGGATGAAACTTCAAAGTTTAAGGCCAATGCATCTTCAGATCCAAGAAAACATCCTTTAATGCGCCAATTTAAGGAAGCTGTATGGAATGTACATCATGAGGGACAGCCAATGCCAGGTGAAGAGCAGGAGGACATTATAATGACTCATACGCAATGCaatattttgaatattaaatGTCCATTAACTGGAAAACCTGTTACTGAGCTAGCAGAACCTGTTCGCAGTATGGAATGTAGGCATATTTATGAAAAGAAGCCAATAATgcaatatataaaatcaaagaaCACTCAATGCCCAATATCAGGTTGCCCAAAGATACTACAGGCAGATAAGGTGATGCGTGATCCGTTGTTGCTGGTTGAGATTGATGAATTGCGCAAAATGAATAAAGAAACTGATCTCATCACTCTTGCTTTTGATATTTTTCTGCTATGTACATTTGTTGAGGACAATTCGTTTGAGACTGTGCTTGCTGCTTTCATCTGTATTCTTTCTCAGTATCGAGACACAACACAAGCAAAGCAAGCAGAATCACTTCTAGTTGTAATGGCGCTTCATAGAATTCCTTTAAGACAGATTTTCTCCCACCGTTTAGTTTCTCGTTCACCTCTCATCTCCAACTATCTCCCTCTTCGCAATCCTTCACCCTCTCCATTCCGCTCGCTTACCCTTTTTGCCTCTCTTTCTTCTACTGCCCAACACCCCTCTTCACACGATGCTGGTTTTCGCTGGAAACCCATGTGCTTGTACCACACGCAGGGCAAGTGCACCAAGATGGATGATCCTATCCACATGGAGAGGTTTAATCATGATTGTTCCAGAGAACTTCGTTTGAATATTGCTGAATTAAACAAAATACGCTCACAGAAGTTAGACTTTTTCCTTGTGCTTGATTTAGAGGGTAGGGTTGAGATTCTTGAGTTTCCAGTTCTAATGATTAGTGCAAAAACAATGGAAGTTGAAGACATTTTCCACAGATTTGTAAGGCCCACAAAAATGACCGAGCAAAGAATCAATGAATATATTGAAGGAAAGTATGGAAAATTTGGAGTTGATAGAGTTTGGCATGACACAGCCATACCATTCAAGGAAGTTATTCAACAATTTGAAGAGTGGTTGGCACAGCATCAGCTGTGGATGGGGGGAAAACTCAATCGAGCAGCATTTGTAACTTGGCAAGTTGGAAATTGGGATTTGAAAACAAAGGTCCCTCAGCAATGTGAAGTGTCAAAGATAAAGCTTCCTCCGTACTTTATGGAGTGGATTAATCTCAAAGATGTCTATCTGAATTTTTATAATAGGAGGGCCACAGGAATGGTTACAATGATGAAGGAACTGCAAATACCTTTGTTGGGAAGTCATCATCTTGGCATTGATGACACGAAGAACATAGCAAGAGTAGTGCAGCATATGCTTTTAGATGGTGCACTCATGCAGATTACAGCaagaaggaatcctaattctccTGGAGATGTTAACTTTTTGTTCAAGAACCGGATCAGATAG 2145 0.4065 MEDFFLSFQSQKKHPEKHNNKKRLTEDQVSILEKNFACNKKLESEQKLQLSNQLGVPPRQIAIWYQNKRARWKTQSLEEEYGALQIKVEIVMAEKKQLERDVERLKAELKEAKEMVHFMKGGGGHHKNWCFGEFSTSCEEVMQDTRRVIGLMKEIAVDLEKDMQSDMVKNLEDSVAELLDVSEDFAHFSSAVQSVADKYQPGEELTDFKKLFEDETSKFKANASSDPRKHPLMRQFKEAVWNVHHEGQPMPGEEQEDIIMTHTQCNILNIKCPLTGKPVTELAEPVRSMECRHIYEKKPIMQYIKSKNTQCPISGCPKILQADKVMRDPLLLVEIDELRKMNKETDLITLAFDIFLLCTFVEDNSFETVLAAFICILSQYRDTTQAKQAESLLVVMALHRIPLRQIFSHRLVSRSPLISNYLPLRNPSPSPFRSLTLFASLSSTAQHPSSHDAGFRWKPMCLYHTQGKCTKMDDPIHMERFNHDCSRELRLNIAELNKIRSQKLDFFLVLDLEGRVEILEFPVLMISAKTMEVEDIFHRFVRPTKMTEQRINEYIEGKYGKFGVDRVWHDTAIPFKEVIQQFEEWLAQHQLWMGGKLNRAAFVTWQVGNWDLKTKVPQQCEVSKIKLPPYFMEWINLKDVYLNFYNRRATGMVTMMKELQIPLLGSHHLGIDDTKNIARVVQHMLLDGALMQITARRNPNSPGDVNFLFKNRIR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0223 714 SMART exoiiiendus 506 690 IPR013520 -
Sto7g0223 714 SMART HOX_1 17 79 IPR001356 GO:0003677
Sto7g0223 714 Gene3D - 14 82 - -
Sto7g0223 714 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 440 714 - -
Sto7g0223 714 CDD SPL-RING_NSE2 270 337 IPR004181 GO:0008270
Sto7g0223 714 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Sto7g0223 714 CDD ERI-1_3'hExo_like 507 685 - -
Sto7g0223 714 Pfam Homeodomain 20 73 IPR001356 GO:0003677
Sto7g0223 714 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Sto7g0223 714 MobiDBLite consensus disorder prediction 1 24 - -
Sto7g0223 714 Pfam Exonuclease 514 680 IPR013520 -
Sto7g0223 714 SUPERFAMILY Ribonuclease H-like 502 685 IPR012337 -
Sto7g0223 714 Coils Coil 81 115 - -
Sto7g0223 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 347 IPR013083 -
Sto7g0223 714 CDD homeodomain 21 76 IPR001356 GO:0003677
Sto7g0223 714 PANTHER OS06G0353400 PROTEIN 440 714 - -
Sto7g0223 714 Gene3D - 495 709 IPR036397 GO:0003676
Sto7g0223 714 SUPERFAMILY RING/U-box 271 317 - -
Sto7g0223 714 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Sto7g0223 714 Pfam Zinc-finger of the MIZ type in Nse subunit 257 316 IPR004181 GO:0008270
Sto7g0223 714 ProSiteProfiles Zinc finger SP-RING-type profile. 254 340 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0223 Sto-Chr7 1589524 1598753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0223 19 144 Homeobox Transcription Factor Family AT5G53980 50.000 9.81e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto7g0223 RNase_T 3.4e-11 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0223 - - lja:Lj3g3v0428960.2 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0223 7 1589524 1598753 Sto7g0223 7 1589524 1598753 ECH