Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0213 ATGGATCAACGAAGGCTTGACTATTTTCATTCTGAACCCTGTATTATGCTTGGGAGACCCAATATCCCTCACCCAAATATCCACACAGTGGTGGCCGCTTCAGGGAACACGAGTAATATTGATTCCCACTATTTGCCAAATGCCTATGACAATGGTGTGATGTATGGCATGGCACAATTTAATGGGTTCCATCATCAACACAATATTGATATGGGTGTTGCAGCCTCATCTAACTTATATTATTCTGGCATGAATCCTTCCTCTGGTAGTGGTGTATTACCTCAACCCATAAATCACCGAGCTATTGATCAATTGCCAGCTTCAGATAATTTTGCAAGAGGTCCATACAAACGAAAAATTACTGAGGGTAGCAGAGGAAATTACCAGTATTTTGATGCCACAGCTAGTTCTTCAGTAGCTCCTCCTAATGCAAGGCACTCTGAGGGTGTTGCTATGATGGATACTCCATCATTTTCCCTTCCTCAATTTACAGGAAATGGCATTCCATCACTTGTGGAAGTTGGACCTCATGGTAGCATGTGGAGCAGGTCAGGTGAGTCTGTTATGCTGCATGAACCTAACCATTTGATTCAAGGAAACTATTTAGGGCAGCACTTCCAACCAGCTCCTCCTCCCTGGTTGGACCAACAGTTGAACAATGCTAACAGTGATGGACATAATACAGCCTGGAATCATTCTCGTTCAATGCCTTATATGCAAGCACCTACTGTTAATGGAACTTCGATAGAGAATGCAAATATGGGTATGCAAAGATATCATGATACAGCAAGCAACCGAAGTGGTCTGAGGTTTCCTCATCCTCATCCTGTCAACCACCCAAACCATAATTATCACTTTCCAACATTGCCTATGCAAGGAGTAAGAGGCCACAACTTCCACCCTCCAGTAACTGCAGCAACTTATAGGGTTCCATCGAATTCTTCACGTAATACTGCTATCCCAGTGCAAAATCGTTTTGAGTTGGGGGCTAGGCATATTGGCCCTGCACCATCAGCAGGCGTACGGATATATCATCCTCTTAGAGGATTCACACCCGAGACAACTCATAGACATCGAAATTTCCCTGCTATGAGTTTTCtccttgttgatGACATGGGAAATCTGGTTGACCATCATAGTGATATGCGCTTGGACATAGAGGATATGTCATATGAGGAGCTTCTTGCTTTGGGTGAGCGGATTGGCAATGTGAGCACAGGTTTGTCAGAGGAAACTATTACATCTCAACTGAAGATGAAAACTTACAAGTCCTCTACTACTATAAATCTGGAGGAGGTAGCTTCTGAGGATCAGGAGACTGATGCCTGCATCATATGCCAGGATGAATATAAGAACCGAGAGACTATTGGAATTCTTAAATGTGGGCATGAGTATCATTCTGATTGCTTGAAGAAATGGTTGCTGGTGAAGAATGTCTGCCCCATATGCAAATCAGAGGCATTGATCCCAGGAAGGAAAGACGTATAG 1488 0.4315 MDQRRLDYFHSEPCIMLGRPNIPHPNIHTVVAASGNTSNIDSHYLPNAYDNGVMYGMAQFNGFHHQHNIDMGVAASSNLYYSGMNPSSGSGVLPQPINHRAIDQLPASDNFARGPYKRKITEGSRGNYQYFDATASSSVAPPNARHSEGVAMMDTPSFSLPQFTGNGIPSLVEVGPHGSMWSRSGESVMLHEPNHLIQGNYLGQHFQPAPPPWLDQQLNNANSDGHNTAWNHSRSMPYMQAPTVNGTSIENANMGMQRYHDTASNRSGLRFPHPHPVNHPNHNYHFPTLPMQGVRGHNFHPPVTAATYRVPSNSSRNTAIPVQNRFELGARHIGPAPSAGVRIYHPLRGFTPETTHRHRNFPAMSFLLVDDMGNLVDHHSDMRLDIEDMSYEELLALGERIGNVSTGLSEETITSQLKMKTYKSSTTINLEEVASEDQETDACIICQDEYKNRETIGILKCGHEYHSDCLKKWLLVKNVCPICKSEALIPGRKDV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0213 495 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 111 490 - -
Sto7g0213 495 SMART ring_2 443 483 IPR001841 -
Sto7g0213 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 488 IPR013083 -
Sto7g0213 495 ProSiteProfiles Zinc finger RING-type profile. 443 484 IPR001841 -
Sto7g0213 495 SUPERFAMILY RING/U-box 436 488 - -
Sto7g0213 495 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 111 490 IPR045191 GO:0061630
Sto7g0213 495 Pfam Ring finger domain 442 484 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0213 Sto-Chr7 1535082 1537392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0213 357 488 C3H Transcription Factor Family AT2G15530 49.242 1.23e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0213 K19041 - gmx:100779069 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0213 7 1535082 1537392 Sto7g0213 7 1535082 1537392 ECH