Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0191 ATGGATCCCACCAAGAAGAGAAAGCTTGACGAAAACGGCGTCGCATCCGCTGATTCCGATCTCAGACTCACCCCTTCCGACGCACGCAAAATCATCGAGCGCTTTAGCCCTGACCAGCTCTTAGACATCCTCCAAGAAGCCGTCGCTCGCCATACCGACGTTCTTGAGGCCGTGCGCACTGTAGCAGATCCCGATATTTCTCAGCGCAAGCTCTTTATCCGTGGACTTGGGTGGGACACCACCACCGATGGCCTCCGGAGTCTCTTCTCCACTTACGGTGAGCTCGAAGAAGCGGTTGTGATTCTTGATAAGGCCACCGGTAAGTCTAGGGGATATGGTTTTGTTACATTTAAGCATGTTGATGGTGCTTTGCTCGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTCACTGTCACGCAGCTTGCGGCGGCAGGGAATTCGGGGTCCAACACCAACGCTGTGGACATTGCGCAGCGGAAGATATACGTTGCGAATGTGCCGCCTGATCTCCCGGCGGATAAGTTATTGGCTCACTTTTCACTTTATGGAGAGATTGAGGAGGGGCCGTTAGGGTTTGATAAGCAAACTGGTAAGTCCAAGGGTTTTGCTCTTTTTGTGTACAAGACGGCGGAGGGGGCGCAAGCAGCACTTGTAGATCCTGTGAAGACTGTCGAGGGAAGGCAGTTGAATTGCAAGTTAGCGATAACAGATGGCAAGCAAGGTAAGCGAGGCGGTGCTGGGCCGGGAGGAACAGATGGAGTTCAGGGTCTTGGGAATGCTCATGGGGATGGAATGGGAATGGCGCCGCCTTCTTCCATGCCTGGATCGCTTGCGGGTCAATACGGTGGCCCCGTTGGCCTAGGGTCATATGGGGGCTATACTGGTGGGCTTCAGGGTCAGCCTCCGCTTGGTAGTCATCCTATGGGAGTGGGTAACCAGGCCCCCTCTTCTCTAGGCGGGACTGGCGGATACGGTTCTGGTCTAGGTGGTGGTCCTTATGGAGGTTATGGTGGGGCTGCGGCAGCTGGCTACGGGGGACTCGGCAGTGGTGCTGCTGGTGGTGGAATGGGTGGTAGTGGTGGACTCGGTGGTTCTGGTggtggaatgggtggggccggTTCTTTGTATAGATTGCCGACTTCAGTTGGAATGCCCGCTGGTGGCTATCCAGATAGTGGACATTATAATTTGTCATCATCAGCTGGGTACCCCAATCAACATCATCAACCTGCTGGAGCGTCGCCTTTACCAAGGGTTCCACCTGGTGCTATGTATCCAAATGTGTATCATGGCTTATTGGGCGCAGATGCTTTATGTGGTTCTGGGGATTGCGTTGATTGCAGACTATGTGCTCTGGTTTGA 1368 0.5336 MDPTKKRKLDENGVASADSDLRLTPSDARKIIERFSPDQLLDILQEAVARHTDVLEAVRTVADPDISQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAVVILDKATGKSRGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGSNTNAVDIAQRKIYVANVPPDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALVDPVKTVEGRQLNCKLAITDGKQGKRGGAGPGGTDGVQGLGNAHGDGMGMAPPSSMPGSLAGQYGGPVGLGSYGGYTGGLQGQPPLGSHPMGVGNQAPSSLGGTGGYGSGLGGGPYGGYGGAAAAGYGGLGSGAAGGGMGGSGGLGGSGGGMGGAGSLYRLPTSVGMPAGGYPDSGHYNLSSSAGYPNQHHQPAGASPLPRVPPGAMYPNVYHGLLGADALCGSGDCVDCRLCALV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0191 455 CDD RRM_RBM24_RBM38_like 69 144 - -
Sto7g0191 455 MobiDBLite consensus disorder prediction 240 260 - -
Sto7g0191 455 MobiDBLite consensus disorder prediction 399 418 - -
Sto7g0191 455 MobiDBLite consensus disorder prediction 294 318 - -
Sto7g0191 455 SUPERFAMILY RNA-binding domain, RBD 62 146 IPR035979 GO:0003676
Sto7g0191 455 Gene3D - 153 270 IPR012677 -
Sto7g0191 455 Gene3D - 56 152 IPR012677 -
Sto7g0191 455 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 401 - -
Sto7g0191 455 PANTHER GEO13361P1-RELATED 1 401 - -
Sto7g0191 455 SMART rrm1_1 162 234 IPR000504 GO:0003723
Sto7g0191 455 SMART rrm1_1 70 142 IPR000504 GO:0003723
Sto7g0191 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Sto7g0191 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 161 IPR000504 GO:0003723
Sto7g0191 455 SUPERFAMILY RNA-binding domain, RBD 151 261 IPR035979 GO:0003676
Sto7g0191 455 CDD RRM_RBM24_RBM38_like 161 236 - -
Sto7g0191 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Sto7g0191 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0191 Sto-Chr7 1406994 1410060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0191 157 254 C2H2 Transcription Factor Family AT2G19380 41.000 1.14e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0191 K12741 - zju:107432547 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0191 7 1406994 1410060 Sto7g0191 7 1406994 1410060 ECH