Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0020 ATGGTTAGGTCTTTATCCGTGACTTATACTGAGCAAGAAATCCAACAGTGGCGTGAAGCAAGGAGGAAGAACTACCCTTCTAAAAACAACTTTGAAAAGAAGCAGAGTGGGCGTCAGAATGGCTCAAAGGTCGTTAATAGGGAAGACTTACGAAGGGagCTCAAGGAGATTTTAGCAAAGCAAGCTGCATTGGGGGTTGAAGTTGCTGAAATTCCGACTCACTATCTGAGGGATCCACAAAACAATTGTGTCAAGGGTGAAGAGAAAAGGAATTTtgccaacaaaagaaaattccAAAACAAGTTTGACAGAAGAACAGACAGACAGGATCAATACTCTAATAAGCAGAAGATTGCAAAGAAAAATTTTCCGAATGCCCCAACTTTATTGCAGAAACTCTTGAGTGCAGATATAAGGAGGGATAAGAGGCATTTGTTTCAGGCTTTTAGGTTCATGCGTGCAAGCTTCTGCGAAGAAGATGCGGCGAGGATTGTGTATTTGCGCCTTATTTTCCAGCTGATCAACCCCACAAATTTGCCTGCGTTCATAAGGTTTTCGGGGCTAGTAATGTCAACAAAATGCTTCAGGTTCCTTCcctttcattcattcatttccTACAACCTACCTAATTATTCTTTATTAAAAGGATGGGATGATGAGgAATTGGGAGAGGAGCAGAGAAGTGATGCAGTGAGTTCAATGGTGTATGAAGCAAAGGCAAGGATGAGAGATCCTGTGTATGGGTGCGTGGGAGCCATATCCTCTCTGCAACAACAAGTTGATGAGCTTCAAACCCAACTGGCTCAGGCTCAGGCAGAGGTTCTGCACATGAGAGTAATGGCCACTCAATCACCTCTGCCTCTGCCTAATTCCAATTCATCATCAACCAACTCCTTTTTTCCCATCCACATCCCAGACTCCTTCTGGTCATGCTAG 936 0.4177 MVRSLSVTYTEQEIQQWREARRKNYPSKNNFEKKQSGRQNGSKVVNREDLRRELKEILAKQAALGVEVAEIPTHYLRDPQNNCVKGEEKRNFANKRKFQNKFDRRTDRQDQYSNKQKIAKKNFPNAPTLLQKLLSADIRRDKRHLFQAFRFMRASFCEEDAARIVYLRLIFQLINPTNLPAFIRFSGLVMSTKCFRFLPFHSFISYNLPNYSLLKGWDDEELGEEQRSDAVSSMVYEAKARMRDPVYGCVGAISSLQQQVDELQTQLAQAQAEVLHMRVMATQSPLPLPNSNSSSTNSFFPIHIPDSFWSC 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0020 311 Pfam Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) 8 43 IPR019496 -
Sto7g0020 311 Pfam Lateral organ boundaries (LOB) domain 221 271 IPR004883 -
Sto7g0020 311 PANTHER NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 3 153 - -
Sto7g0020 311 PANTHER NUCLEAR FRAGILE X MENTAL RETARDATION-INTERACTING PROTEIN 1 3 153 - -
Sto7g0020 311 Coils Coil 253 280 - -
Sto7g0020 311 MobiDBLite consensus disorder prediction 20 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0020 Sto-Chr7 264415 273529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0020 220 296 AS2 family AT1G16530 58.442 1.14e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto7g0020 LOB 9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0020 K14404 - gmx:100786384 183.726