Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4379 ATGGTGTCTTCTAGAGGAGAAACCCCGGGGCAGCCCCAGATGATGAGTGGAGGTGCTCAAAAATTAACAACAAACGATGCCTTACAATATCTTAAGGCAGTTAAGGAAATGTTTCTTGATAAGAGGGAAAAGTATGATGATTTTCTCGAAGTCAtgaaaaatttcaaggcacAAAGGATTGATACTGCCGGAGTTATAGCAAGAGTAAAGGAACTGTTTAAGGGGCACAAGGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATCACGCTTCCGCTGGAGGATGAACAACCTCCCCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAACTTTGTGAACAAAATTaagACTCGGTTTCAAGGCGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTATAGAAAGGAAAACAAGTCTATCAATGAGGTTTATCAGGAGGTTGCTGCACTTTTCCAAGATCATCATGACCTTCTTGTTGAGTTTACTCACTTTCTTCCAGATGCTTCAGGAGCAGCATCTGCTCATATTGCTCAATCTGCTCGGAATTCTTTGAAAATTGGTGGTAGGGCTGATGATTCTGGTGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAAAATTTCGGTCTGCGTCATATGTCATCTCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAGGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAATCCTGATGATTATCAGGAATTTTTGAAGTGCCTACATATCTATAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTACTAGGAAAATATCCTGACCTTATGGAGGGGTTTAATGAATTTTTGGCACGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTCATGAATAAAAGTACGTAA 948 0.3871 MVSSRGETPGQPQMMSGGAQKLTTNDALQYLKAVKEMFLDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSINEVYQEVAALFQDHHDLLVEFTHFLPDASGAASAHIAQSARNSLKIGGRADDSGAEPLHQGGDADENFGLRHMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLARCEKNDGFLAGVMNKST 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4379 315 Gene3D Paired amphipathic helix 104 177 IPR036600 GO:0006355
Sto6g4379 315 Gene3D Paired amphipathic helix 229 302 IPR036600 GO:0006355
Sto6g4379 315 PANTHER SIN3B-RELATED 8 303 IPR039774 GO:0003714
Sto6g4379 315 PANTHER SIN3A, ISOFORM G 8 303 - -
Sto6g4379 315 MobiDBLite consensus disorder prediction 195 214 - -
Sto6g4379 315 SUPERFAMILY PAH2 domain 102 175 IPR036600 GO:0006355
Sto6g4379 315 SUPERFAMILY PAH2 domain 231 298 IPR036600 GO:0006355
Sto6g4379 315 Pfam Paired amphipathic helix repeat 129 173 IPR003822 GO:0006355
Sto6g4379 315 Pfam Paired amphipathic helix repeat 253 297 IPR003822 GO:0006355
Sto6g4379 315 Pfam Paired amphipathic helix repeat 43 87 IPR003822 GO:0006355
Sto6g4379 315 ProSiteProfiles PAH domain profile. 106 176 IPR003822 GO:0006355
Sto6g4379 315 ProSiteProfiles PAH domain profile. 231 300 IPR003822 GO:0006355
Sto6g4379 315 SUPERFAMILY PAH2 domain 20 89 IPR036600 GO:0006355
Sto6g4379 315 Gene3D Paired amphipathic helix 26 88 IPR036600 GO:0006355
Sto6g4379 315 ProSiteProfiles PAH domain profile. 20 90 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4379 Sto-Chr6 46311103 46314580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4379 11 125 WRKY Transcription Factor Family AT4G12020 48.718 4.75e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto6g4379 PAH 9.7e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4379 6 46311103 46314580 Sto11g1057 11 10748906 10757128 CCT
Sto6g4379 6 46311103 46314580 Sto6g4379 6 46311103 46314580 ECH