Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4360 ATGCCGGCGCATCGATCCAAGTCGGAGAAGCACGATGCTGCCAAGCAGCCCCGGCGAGATCCGTATGAGGTTCTCGGCGTCTCCCGCAACTCCACAGATCAGGAAATCAAATCCGCTTACCGGAAAATGGCGCTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAAGTCACATTTTCATATAACATCTTGTCGGATCCTGAAAAACGGCGTCAGTATGACTCAGCTGGTTTTGAGGCTGTTGAATCAGATAGCCAAGAATTGGAGTTGGATCTTTCAAGTTTGGGTGCTGTGAATACAATGTTTGCTGCACTTTTCAGTAAACTAGGTGTGCCAATTAAGACAACTGTATCAGCGAATGTTTTGGAAGAAGCACTTAATGGTGTGGTGACAATTCGCCCACTTCCATTAGGACATCCAATATCTAGAAGGGTTGAGAAGCAATGTGCTCACTTTTATTCAGTTACAATAACAGAAGAGGAAGCGCGGGCTGGTTTTGTTTGTCGAGTGCAATCATCTGACAAGAGCAAGTTCAAGTTATTATACTTTGATCAAGATGAGAATGGTGGATTGAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGAAAGGTTACATCAGCTGGAATGTATTTTCTTGGTTTTCCTGTTTATCGGCTGGATCAAACAGCAAACTCAatagCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTGGATGGGTTCCAACCATGTGAATTAACAGAACTGAAGGCTGGTACCCATGTCTTTGCTGTTTACGGTGACAATTTCTTCAAAAGTGCAAGCTATACAATAGAAGCTCTGTGTGCTGCACCTTttaatgaagaaaaagagagcCTTAAGAATATAGAAGCTCAAATTTTATCTAAAAGGGCAGAACTATCAAAATTTGAGAGTGAATACCGAGAGGTTCTGGCACAATTTACAGAGATGACAAACAGATATGCAAAAGAAATGCAATCGATTGATGAGCTACTGAAGCAAAGAAATGAGATACATGCCTCATATACTATTGCTCCATTAAAACGTTGTACAAGTAAGAGCAAGAGTAAAAGTTCTTCCAAGGAGGCTACAGAAGATGGCCAAGCAAGAGAGAAGAGATATACAAGAGATCgatcaaagaagaagaaatggtaTAATATCCACTTAAGAGTTGATAAGAGAAAGGCCTGCTAA 1227 0.3993 MPAHRSKSEKHDAAKQPRRDPYEVLGVSRNSTDQEIKSAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPEKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSANVLEEALNGVVTIRPLPLGHPISRRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQDENGGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTANSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIEALCAAPFNEEKESLKNIEAQILSKRAELSKFESEYREVLAQFTEMTNRYAKEMQSIDELLKQRNEIHASYTIAPLKRCTSKSKSKSSSKEATEDGQAREKRYTRDRSKKKKWYNIHLRVDKRKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4360 408 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Sto6g4360 408 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 407 - -
Sto6g4360 408 Coils Coil 290 317 - -
Sto6g4360 408 SUPERFAMILY Chaperone J-domain 17 89 IPR036869 -
Sto6g4360 408 MobiDBLite consensus disorder prediction 362 390 - -
Sto6g4360 408 Pfam DnaJ domain 20 82 IPR001623 -
Sto6g4360 408 PRINTS DnaJ domain signature 22 40 IPR001623 -
Sto6g4360 408 PRINTS DnaJ domain signature 40 55 IPR001623 -
Sto6g4360 408 PRINTS DnaJ domain signature 57 77 IPR001623 -
Sto6g4360 408 PRINTS DnaJ domain signature 77 96 IPR001623 -
Sto6g4360 408 MobiDBLite consensus disorder prediction 366 385 - -
Sto6g4360 408 MobiDBLite consensus disorder prediction 1 28 - -
Sto6g4360 408 SMART dnaj_3 19 77 IPR001623 -
Sto6g4360 408 Gene3D DnaJ domain 4 103 IPR036869 -
Sto6g4360 408 MobiDBLite consensus disorder prediction 1 19 - -
Sto6g4360 408 CDD DnaJ 20 74 IPR001623 -
Sto6g4360 408 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Sto6g4360 408 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4360 Sto-Chr6 46185893 46189076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4360 13 83 C2H2 Transcription Factor Family AT1G74250 40.789 1.32e-11 64.3