Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4339 ATGATCCAAAAATCTTATGTATCCGATCGCCGGATTCTGACCTTCCCGGCGGTTCATCCTTCTGAAGATATTTCCATTCCTACCCTTCTCACCTCTTTGCTCACTCTCTCTCGAAGTATATGCAATTTCAAATCCAAATTCTTCCCCTGTAACAAGAAAAATGCCAGAAAAGGCATTCGTATGATCGAGGCTCTTGAGATTTTTCTGGAAGATATCCGAGATCGCCAATGGATCCTCCCAAATCATGTGGTCCTAAGCTTGTCGGAGCTCCATTTGACCTTCCAAAAGCTCCAGTTCCTGCTTCAAGACTGCACTCGCGAAGGCTATAAACTATGGATGCTGATGGAGTCGGATCGGATCGCCACCCATTTTCACATCTTGTCCAAATCCGTTGCCACGGCTCTGGACGTCTTTCCTTTTGATTCTGTTAATGTTTCAATGGAAGTCAAAGAGCACATAGAATTGCTAGTGAAGCAAGCTCGAAAGGGACGAGTCGAAGTTGAGCCCGAAGACAAACGTGCAATGATGTGTGTTGTGTCGATTTTGAATCAATTTGAGAAGTTGACCACTCCAAGCATGAGTGATCTCAAATGGGTTCTTGATTATATTGGAGTTCGAAGATGGAGTGAGTGTAACAAAGAAATCAAGTTTCTCGGGTATGAGAAAATGAACGAAGAGCAAGGAAAAATGGAGCTTTTGAGTAGTTTAGTGGGGTTCATGAGCTACTGCAGATGTGTGGTGATCCAGGTTGTTGACAATAATGGAGATAACCCAAAATctgaagagaaagagaatattATTATGAGTAGTTGCTTCAACCCAAATGATTTTCGATGTCCGATCTCACTCGAGTTCATGAATGATCCAGTGACGATAGAGACAGGTCATACATACGATCGCTCTTCGATTCTCAAATGGTTCAACAGTGGAAATCCTATTTGCCCCAAGACAGGGAAAAGCCTTAGCAGCATCGAACTGGTACCTAATTTGGCGCTTCGTGCCTTGATTCATCAGTATTGTTCTCAAAACGGCATTCCCGTTCCTGATGTGGGTCAAAAGAATCGTGATCGTGACATCAACAAGACTTGTCATCCTGGTAGTTTAGCAGCAGAACAAACCATGAAAATGCAAGCAACTTTTCTTAGAGAACAGATTCAGAACGAAGCAGAGGAAGAGAGAAACAGAGCTGCTTATGAAATCCGGAATCTTTCCAAAACAAACATCTTCAATAGGTCATGTTTTATGGAATCTGGTATCGTACCTCATTTGTTAACGTTGTTGTTGTCGAGTAGTCCAACCACACAAGAAAATGCAATCGCAGGTCTTCTAAATCTCTCCAAACACCCCAAGGGCAGAAGTATTATAGTTCTGAATTGGGGTTTGGAATTGATTGTGGGTGTTCTTAAGAAAGGGATGAAGCTAGAATCTCGCCACCATGCTGCTGCTACGTTGTATTACCTTGCTTCTGATGAGAAGAACAGAAAATTGATAGGGGAGGAGCCAGAAGCAATCTCAAGTTTGATCAGTCTGATCAAAGATGGCTCCGATAGAGGCAAAAAAAATGGCCTGGTTGCTATATTTGGACTCCTCTTTAACGCTGAGAATCACAAGAGGGTTATTGAAGCTAAGGCAATCCCTTTGCTAGTTAACATATTAAGAACCTCCGAAAGAGAAGATCTTGTCACAGATTCACTAGCAGTTTTGGCAAGTCTAGCAGAGAAAAGTGAGGGAACTAAAGCAATTCTTCAGAATGGAGCTGCTTTGCATTTATCTGTTGAAATTTTGAATTCGTATTCAACATCTAGGGTTGGGAAGGAGCACTGTGTCTCTTTATTGCTTTCTCTATCTATCAATGGAGAAGCAGATGTGATTGCTCTTTTGGTGAAGAACCATTCTCTCATGGGTTCCTTGTATTCCTTACTCAGTGAAGGAACATCTCGAGCTGGCAAGAAGGCAAGTGCTCTCATCAGGGTCCTCCACGATTTTTGTGAGAGGAGGCCCTCTGGATTCAAGACTTCAGTTCTTCCTCAAGAACAATCCATTCACGTTTGGTAA 2055 0.4219 MIQKSYVSDRRILTFPAVHPSEDISIPTLLTSLLTLSRSICNFKSKFFPCNKKNARKGIRMIEALEIFLEDIRDRQWILPNHVVLSLSELHLTFQKLQFLLQDCTREGYKLWMLMESDRIATHFHILSKSVATALDVFPFDSVNVSMEVKEHIELLVKQARKGRVEVEPEDKRAMMCVVSILNQFEKLTTPSMSDLKWVLDYIGVRRWSECNKEIKFLGYEKMNEEQGKMELLSSLVGFMSYCRCVVIQVVDNNGDNPKSEEKENIIMSSCFNPNDFRCPISLEFMNDPVTIETGHTYDRSSILKWFNSGNPICPKTGKSLSSIELVPNLALRALIHQYCSQNGIPVPDVGQKNRDRDINKTCHPGSLAAEQTMKMQATFLREQIQNEAEEERNRAAYEIRNLSKTNIFNRSCFMESGIVPHLLTLLLSSSPTTQENAIAGLLNLSKHPKGRSIIVLNWGLELIVGVLKKGMKLESRHHAAATLYYLASDEKNRKLIGEEPEAISSLISLIKDGSDRGKKNGLVAIFGLLFNAENHKRVIEAKAIPLLVNILRTSEREDLVTDSLAVLASLAEKSEGTKAILQNGAALHLSVEILNSYSTSRVGKEHCVSLLLSLSINGEADVIALLVKNHSLMGSLYSLLSEGTSRAGKKASALIRVLHDFCERRPSGFKTSVLPQEQSIHVW 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4339 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Sto6g4339 684 PANTHER U BOX DOMAIN-CONTAINING 8 675 - -
Sto6g4339 684 SUPERFAMILY ARM repeat 381 659 IPR016024 -
Sto6g4339 684 Pfam Armadillo/beta-catenin-like repeat 415 446 IPR000225 GO:0005515
Sto6g4339 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Sto6g4339 684 SMART arm_5 406 447 IPR000225 GO:0005515
Sto6g4339 684 SMART arm_5 448 489 IPR000225 GO:0005515
Sto6g4339 684 SMART arm_5 490 531 IPR000225 GO:0005515
Sto6g4339 684 SMART arm_5 532 573 IPR000225 GO:0005515
Sto6g4339 684 Coils Coil 381 406 - -
Sto6g4339 684 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Sto6g4339 684 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Sto6g4339 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Sto6g4339 684 Gene3D - 375 665 IPR011989 -
Sto6g4339 684 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Sto6g4339 684 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 8 675 - -
Sto6g4339 684 SUPERFAMILY RING/U-box 274 349 - -
Sto6g4339 684 CDD RING-Ubox_PUB 277 319 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4339 Sto-Chr6 46046186 46048240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4339 1 684 U-box Gene Family AT1G60190 45.923 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4339 - - gmx:100795816 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4339 6 46046186 46048240 Sto6g4339 6 46046186 46048240 ECH