Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4326 ATGTCTTTTCAAGGCCAACCACAGCAACAACAACCAGCTCAGGTTTATCCCACCACCACTACTGTCACGAATCAGCCACCTAATTCTCACCATTCAAATGGAAATGGCTCATTTGGAACAGTTTTCATAGTGCTTGCTGTAATATTAGTCATTTCTGCCCTTGCTTGCTTTTTGGGACGCCTCTGCAACCGTCGTCAACAAAACCAGAACCCGGCCCACCTATTTCGGCCCAAAGAAGGAGATGTTGAGCTTGGGCTCGACAAGAGGATTCCATCTCCTGCAGGTGTAAGATTCCCCTCTGCCCAAGATATGGACAAGTTGGTTAGCCTTGTCCTCTACCATGTGCTTCAAATTGCATTACACAACCATCCAGCTGCTATATATGTAAACATCTCTTCCTTTCCATTACACAACGTTCACGACAACCTCCAAAAAGCAAGCTATGAGAGGCTTGGGGATTTCACCATTGGAGTGGCTCAGACCCTTGGTTCATGGAGTGGATGGGTTGCTGCTGTGGAGGGGGATGCAATGAGCAGTGTTCACGGAGACGTGGCAATATCAAAACAAGCTAGATGGCTTATCCAGGACTCAATTGGAACGCAAGTTTTGGTCCCTATTATTGGTGGTCTTGTAGAGCTCTCCACAACAAAGCtgAAAGAAGCCATGTCTGCATGGAGTTGTACACCATCAAGAGAATACTATCCACAAAGCTGGTCACCTACCCCACTAACCCCAACTGAACATGTAGCTCCAGTAAACCAGTGCATTGAAGGATCCTCCAGTGGGTCAAACCCATCATTTGATTCAAATTCTGTTTACTTGACTCAGCATGAAGCTGCCAGAAAGTCAGTTAATAGATCTATTGGCTCTAAGAGTGAAACTTCAGAAAAGCATGGCAATCTGGAAGAAGATAAATCAGAACTGATGAAGGAGCCTCAAAAGGAATGCTTCATATCTAAAAATCTTGTGACTGAGAGGAATAGGAGGAACAGGATCAAAGATGGGCTTTTTACTCTACGGTCTCTTGTCCCAAAGATAACCAAGATGGATAGGGGAGCCATTCTTGGAGATGCCATTGATTACATAAAGGAATTGCAAGAACAAATAAAAGGACTTGAAGATGAGACGAGGGATttgggagaagaagaagacgactaTGAGAAGAGCACAACAAAGTTGAGGAGGCAAATACAGAAGGAAGAAGGAAGGACCAGAAATCCCCCACTTAACGAGCTCATCAGAAGTTGTTGCACTATAAAGACCCAAATGGAGGTGCAAGTGCAAGTGGAAGTGAACCAGATTGGGAGGCgagaatattttattaagttaCACTATGAGAAGAAGCGAGGTGGGTTTGCAAGATTGATGGAGGCTATACATTCATTTGGACTGCAGGTGGTTGATGCCAATATCCACACATTTGATGGAAAAGTCTTGAGTATTCTGACCGTTGAGGCGAACAGGCAGGATATTGACCCAAAGAGATTGAGAGAATATTTAACTGAGCAAGCTGTTTCATGGTAG 1524 0.4337 MSFQGQPQQQQPAQVYPTTTTVTNQPPNSHHSNGNGSFGTVFIVLAVILVISALACFLGRLCNRRQQNQNPAHLFRPKEGDVELGLDKRIPSPAGVRFPSAQDMDKLVSLVLYHVLQIALHNHPAAIYVNISSFPLHNVHDNLQKASYERLGDFTIGVAQTLGSWSGWVAAVEGDAMSSVHGDVAISKQARWLIQDSIGTQVLVPIIGGLVELSTTKLKEAMSAWSCTPSREYYPQSWSPTPLTPTEHVAPVNQCIEGSSSGSNPSFDSNSVYLTQHEAARKSVNRSIGSKSETSEKHGNLEEDKSELMKEPQKECFISKNLVTERNRRNRIKDGLFTLRSLVPKITKMDRGAILGDAIDYIKELQEQIKGLEDETRDLGEEEDDYEKSTTKLRRQIQKEEGRTRNPPLNELIRSCCTIKTQMEVQVQVEVNQIGRREYFIKLHYEKKRGGFARLMEAIHSFGLQVVDANIHTFDGKVLSILTVEANRQDIDPKRLREYLTEQAVSW 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4326 507 MobiDBLite consensus disorder prediction 283 310 - -
Sto6g4326 507 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 179 502 - -
Sto6g4326 507 MobiDBLite consensus disorder prediction 383 407 - -
Sto6g4326 507 Coils Coil 291 311 - -
Sto6g4326 507 MobiDBLite consensus disorder prediction 291 310 - -
Sto6g4326 507 SMART finulus 322 371 IPR011598 GO:0046983
Sto6g4326 507 MobiDBLite consensus disorder prediction 1 33 - -
Sto6g4326 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 382 IPR036638 GO:0046983
Sto6g4326 507 MobiDBLite consensus disorder prediction 373 407 - -
Sto6g4326 507 Pfam Helix-loop-helix DNA-binding domain 324 366 IPR011598 GO:0046983
Sto6g4326 507 Coils Coil 355 389 - -
Sto6g4326 507 Gene3D - 318 398 IPR036638 GO:0046983
Sto6g4326 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Sto6g4326 507 PANTHER TRANSCRIPTION FACTOR BHLH90 179 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4326 Sto-Chr6 45953907 45959154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4326 180 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 30.056 6.43e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g4326 HLH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4326 - - gmx:100807261 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4326 6 45953907 45959154 Sto6g4326 6 45953907 45959154 ECH