Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4279 ATGGAGTCATTGATTGGAAGTGTGAAAAAGCTGAGTAGTGAGGATTTTGTTGTCTCTGACTTTGGATTTGTTGTCCTAGGTAGGATCATGGAAGATGGGCATCTGAAAGACTCGTGCATCTCCGTTGCTTCCAACAAGAGGAGCCTGAGAGATAAGCCACCCTCCGCCATGAGGTACCGCGGAGTTAGGCGGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGGGACCCGCAGTCGAAGGAGAGGCGCTGGCTAGGTACCTTCGACACAGCTGAGGAAGCCGCTTGCGCTTACGACTGCGCCGCTCGAGCCATGCGCGGTCTTAAGGCTCGCACCAACTTCGTCTATCCATCCTCCCCTCCTCCTTACGACCATCTCTTccctcccttctcctttccCAAACAATCTCACTCCAACAACAACAACTACTTCCACAACCATCACCAACTCCCACACCCTCctccaccttcttcttcttcttctaactGGTCTAACCCCCaggcccaagcccaagcccaccCACAGCCCACTAATAATACTAGTCTCAACATGCTTCTCTACCGTGATTTCTTCAACTACTCTTCccctaatcctaatcctaatcctTCGTCCTGTCTCAATGCTTGCTGCAGTTTGCTCAATTCTTCTTGTGCTGATGACATCACCAACATCAATACTAATACTAATACTAATAGTGAAGGTGGTGGTGATGATGAGTTTGAATTCTTTCCAAGAGACACATCCCACTCTGGACTGTTGGAGGAGATTGTTCATAAATTCTTGCCAAAACCCAACACCCTCAAATCTCACACTAACACcaccactactactactactactactactcttCATGCTCATGCACATGCCCATGCCCCACCGCAGTTACACCAACCTCAGCCATCCATGTTGGTGGTggacaacaacaacaactatGGTGCTGTGTGTTTGGACCAACAACAAATTGAGAGTTATGACTACGCCTTTAACTCGGTGCAACTGCAACAATACCATCCCTTGATGCTCAATGATGCAGCAGACTTCTCAATCACCCAACACAATACTAATAATATCCTTCCTTACCACGATAATTACTTTCTTAAGCCTTTTCCACCCACCATCCCAAATGCTTAA 1131 0.4244 MESLIGSVKKLSSEDFVVSDFGFVVLGRIMEDGHLKDSCISVASNKRSLRDKPPSAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPSSPPPYDHLFPPFSFPKQSHSNNNNYFHNHHQLPHPPPPSSSSSNWSNPQAQAQAHPQPTNNTSLNMLLYRDFFNYSSPNPNPNPSSCLNACCSLLNSSCADDITNINTNTNTNSEGGGDDEFEFFPRDTSHSGLLEEIVHKFLPKPNTLKSHTNTTTTTTTTTTLHAHAHAHAPPQLHQPQPSMLVVDNNNNYGAVCLDQQQIESYDYAFNSVQLQQYHPLMLNDAADFSITQHNTNNILPYHDNYFLKPFPPTIPNA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4279 376 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Sto6g4279 376 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 40 230 - -
Sto6g4279 376 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 216 334 - -
Sto6g4279 376 MobiDBLite consensus disorder prediction 161 179 - -
Sto6g4279 376 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Sto6g4279 376 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 216 334 - -
Sto6g4279 376 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 40 230 - -
Sto6g4279 376 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Sto6g4279 376 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Sto6g4279 376 MobiDBLite consensus disorder prediction 137 179 - -
Sto6g4279 376 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
Sto6g4279 376 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Sto6g4279 376 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Sto6g4279 376 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4279 Sto-Chr6 45670234 45674273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4279 57 264 AP2-EREBP Transcription Factor Family AT1G24590 42.661 4.39e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g4279 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4279 - - jre:108981535 177.948