Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4248 ATGGAAGCAATCCAAACAGGGAAAATCCATGTTGCTGTTGGGAATGATTTGCAAGATGGAATAAAAACCTTGCATTGGGCTCTCAATAAATGGAAATCTCATCCCATCTCCATTGTCATTCTCCACGTGAATCACAACAATTCCAGGGATTATGTTTATACCCCATTTGGGAGACTCCCATCAAGATCTGTGAGTGATGAGAAGCTAGCAGTTCTCAAGAAAATAGAGCAAGAGAAAGTCCACAAGTTGCTTTCCAAGTATATAGCTTGCTGTGGGAAGGTGCCAGCTGAAACAATTGAAGTTGAGAAATTTGATGAAACAATCCAAAAGCGCATCGTAGACTTGATTTCCAGTATGAAAATCACCAAACTAATCATGGGATTTTCATTAATCAAGCCCTCCAGCAAATCAAGAGGTGCCATAAGCGGATTGTTCTATGTTCATCAGCATAAGCCTGACTTCTGTGAATTGTTCATCATATGCGGAGGGAAACAAGTATTCTTCAGAGGACAGAGTGATGAGAAAATCATGGAGGACGATAATGGGGTCATGGTAGCGAGAATGAAAGATAAAGTAACTTTCAAAGATTGGTTAGAGAGAATGTTCACTGAAAAAAGCACGGATTCCCCAATTAGTAGGATCTCTCATGGGTCATCAACTTCTTCAGCAATCATGGATTCTCCTGTCTCACAGAACCAGTGGGAATTCTATCTCCAAGAGATTGAAAGTTATTTTCAGGATTTGTTGTCTTCTAATTTGGATGAACAAAGCTTTGGAGAGCAAGACAGTGACATCTCGCAGACTAGTCCACAGGATACAGATATTACACAACAGAATAATTCTAATACGAGTGGTGCAGAGAAAATTCAGATTCTAAAAACTAAACTCAATGAGGCACATAAGACTATCCAATTGAAGAGGAAAGAAGCCAAGGACAATTTGGAGAGACACGCAAAAGCTGAATGGGCTATTTGTTTATGCAACACTAGAGTTGAAGAACTAGAAAGCAaaataaaggaagaaagaagtaaaagagAAGAGTTAGTGAAAGAAGTGGAAGCAGAAAAAGAGAAGATATACGAAAAGAAAGGCGATgtagaagagaggaagagaaggtTGAGTTCATTGGTGGAGCTTCAATCGGAGGTGTCAAGCAAGTTTCAAATATGCACACTTTCAAAGTCACGAGCAGAAGCCCAACTGGAGAAGGCAGCCATGGCTAGGTCCGAGATGGTGAGAGAAATAGAAGAACTAAGAAGGCAACGAGATGTGCTGAATAGAAGAATAGAGTTTTGTAAAGACAAGGATGCCATAGGAACGGCTGCTAGGCTTACCCAACCCACCTCTAGTTTTAGGGAATACACGGCCCAAGAGATCAGGCTCGCCACCGACAACTTTTCCGACCGCCTGAGGTTGAAGTCCGGCGGTGACTGGACTAATGTTTATAGAGGAAGGATCAACCATTCCACTGTCGCAATCAAGATGCTCAATTCGGTTCGTGTTAGAATTCAATATGATCAGGTGGGACTTCTTAGTAGTATTCGGCACCCTCATGTGGTTGCGATGGTTGGCTTCTGCTCAGAGCTAAAGTGCATAGTTATGGAATACATGCATAATGGGAGCTTGCGAGACATGCTATTTTCCAGGAGAAGAAATCACGCCTTACCATGGCATGATCGGATCAGGATTGCGACTGAAGTTTGCTCGGGCCTGGGCTTTCTTCATGCAGCCCAGCCCAAGGGCCTTATCCATGGCCACCTTACTCCTTCCAGTGTTCTCCTAGATCGCAATCTCGTGGCAAAGATCAAAGATATTGGCCCCAATGAATGCAGTTATGAATCTGACATAAGGGCGTTGGGGGTTTTAATTTTGCATCTTTTGACGGGAAGAAATTGGATGGGTGTGCTTGAGGAGGCAATGACGATGGATAGAGAAGCCTTGGTTGGGGTTGTGGATGGAATGGGCGGGGAGTGGCCATTGGATGTAGCTCAAAAGCTGGCAGGCTTAGCAATTAGGTGCATGGGCAAGACCCATGGGCCTGAGCCCAATATTAGGACGGTGATGGAGGAGCTAAATGAGATTAGAAGGGAGGGTGAGGATGTAGTTGTAGTTACAAGAGAAGGAGAGATTGTAAATGGGGAAGGCTCCAGCGATGTGCCCAGTGTCTTCTTGTGTCCTATACTTCAGGAGGTGATGAGGAACCCACATGTGGCAGCTGATGGGTTTTCATATGAGCTAGAAGCAATAGAAGAATGGGTGCATTCAGGGCATGATACATCACCCATCACAAACTCAAGGCTCAACCACTTGTTCCTTACTCCTAATCAAACCCTTCGTTCCCTAATACACGACTGGCAAACCAAAACATCACTTGAActtgcaaattaa 2388 0.4284 MEAIQTGKIHVAVGNDLQDGIKTLHWALNKWKSHPISIVILHVNHNNSRDYVYTPFGRLPSRSVSDEKLAVLKKIEQEKVHKLLSKYIACCGKVPAETIEVEKFDETIQKRIVDLISSMKITKLIMGFSLIKPSSKSRGAISGLFYVHQHKPDFCELFIICGGKQVFFRGQSDEKIMEDDNGVMVARMKDKVTFKDWLERMFTEKSTDSPISRISHGSSTSSAIMDSPVSQNQWEFYLQEIESYFQDLLSSNLDEQSFGEQDSDISQTSPQDTDITQQNNSNTSGAEKIQILKTKLNEAHKTIQLKRKEAKDNLERHAKAEWAICLCNTRVEELESKIKEERSKREELVKEVEAEKEKIYEKKGDVEERKRRLSSLVELQSEVSSKFQICTLSKSRAEAQLEKAAMARSEMVREIEELRRQRDVLNRRIEFCKDKDAIGTAARLTQPTSSFREYTAQEIRLATDNFSDRLRLKSGGDWTNVYRGRINHSTVAIKMLNSVRVRIQYDQVGLLSSIRHPHVVAMVGFCSELKCIVMEYMHNGSLRDMLFSRRRNHALPWHDRIRIATEVCSGLGFLHAAQPKGLIHGHLTPSSVLLDRNLVAKIKDIGPNECSYESDIRALGVLILHLLTGRNWMGVLEEAMTMDREALVGVVDGMGGEWPLDVAQKLAGLAIRCMGKTHGPEPNIRTVMEELNEIRREGEDVVVVTREGEIVNGEGSSDVPSVFLCPILQEVMRNPHVAADGFSYELEAIEEWVHSGHDTSPITNSRLNHLFLTPNQTLRSLIHDWQTKTSLELAN 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4248 795 Coils Coil 289 313 - -
Sto6g4248 795 Gene3D Phosphorylase Kinase; domain 1 439 536 - -
Sto6g4248 795 SUPERFAMILY Protein kinase-like (PK-like) 447 694 IPR011009 -
Sto6g4248 795 MobiDBLite consensus disorder prediction 256 286 - -
Sto6g4248 795 SMART Ubox_2 722 785 IPR003613 GO:0004842|GO:0016567
Sto6g4248 795 Pfam Protein tyrosine and serine/threonine kinase 476 606 IPR001245 GO:0004672|GO:0006468
Sto6g4248 795 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 7 788 - -
Sto6g4248 795 Coils Coil 331 369 - -
Sto6g4248 795 CDD RING-Ubox_WDSUB1_like 723 764 - -
Sto6g4248 795 Pfam U-box domain 719 788 IPR003613 GO:0004842|GO:0016567
Sto6g4248 795 Coils Coil 394 435 - -
Sto6g4248 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 793 IPR013083 -
Sto6g4248 795 PANTHER OS02G0152300 PROTEIN 7 788 - -
Sto6g4248 795 ProSiteProfiles Protein kinase domain profile. 467 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto6g4248 795 SUPERFAMILY RING/U-box 716 791 - -
Sto6g4248 795 Gene3D Transferase(Phosphotransferase) domain 1 537 707 - -
Sto6g4248 795 ProSiteProfiles U-box domain profile. 718 792 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4248 Sto-Chr6 45500103 45503924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4248 8 788 U-box Gene Family AT5G65500 48.379 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sto6g4248 PK_Tyr_Ser-Thr 1.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4248 - - gmx:100786771 1046.57