Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4246 ATGGCTCGCGACACTAATTGGCTGTCGTTTTCGTTATCGCCGATGGAAATGCTGAGGTCCTCCGACGACACTCACTTCCTCCAATACGACAACCCCTCCGCTCCCAATCCTTCTCACTACTCCGTCGATAGCTTCTATGCCAATGGGTGGACAAATCTCAAGTCACAGGTGGAGTGCAATTACCAGGGCCAGGGCAGAGGAAGCGAGGCGGAATCAGTGATTCTAAAAAGCTTCATGGAAGCCCAGAATCAGAATCAGAATCATGGGGTTCCCAAGCTGGAAGACTTCTTGGGTTACTCCGATAGCCAAACGGAGACCCAAGATTCGTCGCTCACTCATATATACGAATACGAGCAGGGTGGGACCGGGTCGGGTTATTTCGGCGACCCGCAAGATCTGAAAGCAATCGCTGGGTTTCAACCCAACTCGGCCTCCGAAGTGGTGGATGAGTCGGCCAAAACGATTGCGGCTCAGTCCATGGAGTCGTCCGGGAACGACGTGGCCTTCTCTGCTTGCGGCACGGGTTCTTTGTCTCTGGCTGTCACACAAACTCATGAGAAGCCCTTGCTACCGCTGGATTCCGATTCCTCCAAGAAGGTTGCTGATACTTTTGGTCAGCGAACTTCCATTTACAGAGGTGTCACGAGACATCGGTGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAAGCCAGGAAAGGACGTCAagAAAAGAGGAAGGGTGGGTGGGGTATTCGAATCAATCTCAATGTACACTGGTTTGCACTTCCTGTAGCCAGAAAGGGAGGtaaagagaaagaaacaaagTGGATGAAAAAGAAAGGTGGATATGACAAGGAAGATAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTCAAGTATTGGGGTGCTGCTGCTACCACCAACTTTCCTATCTCCAACTATACGAAGGAACTGGAGGAGATGAAACATGTAACCAAGCAAGAATTTATTGCATCATTGCGAAGGAAAAGTAGCGGTTTTTCCAGGGGAGCTTCTATATACAGGGGCGTAACAAGGCATCATCAGCAGGGGAGATGGCAAGCAAGAATTGGTCGTGTTGCAGGGAACAAAGATCTGTACCTGGGAACATTTGCTACTGAAGAGGAAGCAGCGGAGGCATACGATATTGCAGCCATCAAATTCAGAGGGGCGAGTGCAGTGACGAATTTCGAGATGAGTAGATATGATGTGGAGAGTATCATGAAGAGTTCTCTTCCTGTTGGGGGTTCAGCAAAACGGTCAAAGCCTTCCCCAGAAGCAGAGCAGAATGGTGTTGCGAACAATTATCAGCAATCCCAATATCCAGACATGAGTAGCACTATCAATTTCTCACCCATTCAGCCTGCTCTCCCCTTTGACTCTGCAACAGCACAATACCACCACAATCTCTTGCACCATTTTTATCCTTCCAACACTGACTCTCTGCTATCTACCACCGCTTTCGCACCTCTCAATGTCATGCCCGCTGCAGCCGAGTTTTTTCTCTGGCCTCATCAGCCCTGTTGA 1548 0.4903 MARDTNWLSFSLSPMEMLRSSDDTHFLQYDNPSAPNPSHYSVDSFYANGWTNLKSQVECNYQGQGRGSEAESVILKSFMEAQNQNQNHGVPKLEDFLGYSDSQTETQDSSLTHIYEYEQGGTGSGYFGDPQDLKAIAGFQPNSASEVVDESAKTIAAQSMESSGNDVAFSACGTGSLSLAVTQTHEKPLLPLDSDSSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQEKRKGGWGIRINLNVHWFALPVARKGGKEKETKWMKKKGGYDKEDKAARAYDLAALKYWGAAATTNFPISNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVESIMKSSLPVGGSAKRSKPSPEAEQNGVANNYQQSQYPDMSSTINFSPIQPALPFDSATAQYHHNLLHHFYPSNTDSLLSTTAFAPLNVMPAAAEFFLWPHQPC 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4246 515 SMART rav1_2 210 317 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 SMART rav1_2 347 411 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 SUPERFAMILY DNA-binding domain 275 313 IPR016177 GO:0003677
Sto6g4246 515 MobiDBLite consensus disorder prediction 419 438 - -
Sto6g4246 515 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700|GO:0006355
Sto6g4246 515 Gene3D AP2/ERF domain 210 313 IPR036955 GO:0003700|GO:0006355
Sto6g4246 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 249 - -
Sto6g4246 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 280 483 - -
Sto6g4246 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 280 483 - -
Sto6g4246 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 249 - -
Sto6g4246 515 ProSiteProfiles AP2/ERF domain profile. 210 311 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 Pfam AP2 domain 347 397 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 CDD AP2 346 407 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 PRINTS Ethylene responsive element binding protein signature 211 222 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 SUPERFAMILY DNA-binding domain 346 407 IPR016177 GO:0003677
Sto6g4246 515 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700|GO:0006355
Sto6g4246 515 CDD AP2 209 313 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4246 Sto-Chr6 45486635 45490245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4246 71 434 AP2-EREBP Transcription Factor Family AT5G10510 57.007 4.24e-135 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto6g4246 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4246 K09285 - jre:108990656 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4246 6 45486635 45490245 Sto11g1221 11 12101995 12104325 CCT