Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4230 ttggtatcagagctacaGGATCCAGTCGTGATGGCGGCAAAATTTGAGATCGAAAAATTCAACGGCAACAATGATTTCAGCCTTTGGCATGTGAAAATGCGTGCCTTGTTAGTGCAACAAGGGCTGCTAAAGGCATTAGAAGGAAAGGAGGCTCTGCCGACCGAGTTATCCAATCAAGAAAAGGATGACCTTCTGGAGCGTGCACTTAGCACTATTTTGTTATCTCTAGCAGATGATGTTTTGCGGGAGGTTGCAGACGAGAAATCGGCAGCAGGCTTGTGGCTTAAATTGGAAACTCTGTATATGACAAAATCCCTCACCAATCGGCTTTATTTAAAGCAGCGGCTCTACACTCTTCGGATGAAGGAAGGCACACCTATAAAAGACCATCTTGCTGAGTTGAATAAAGTTATCATGGATCTGAAAAATACTGATGTCAAACTTGATGATGAAGATCAGGCGTTGATCTTATTGTGTTCTCTACCTCATTCATATGAGCATTTTGTTGACACCATGCTCTATGGAAGAGAGGCTCTGACCATGGAAGATGTAAAAGCTTCGCTGAACTCTCGTGAGTTGAAGAGAAGGGTCTCAGAAAATTGGAGTGAAAATCAGGCCGAGGGTCTGTTTGGTCGAGGTAGAAACAAAGAGAGAAGTTTTGGTAATAATAGAGGCAAATCCAGATCAAAATCCAAATTCCGGAAAGGCAGATGTCGTTACTGCAAAAAGAAAGGGCATTGGAAAGTAGAATGTCCGAAGATCAAAGAGAGAAAGGAGTCAGCAGATAATGCTCCTAGTACTAGCGACACAGCTAGTGTTGTTGTAGAAAATTTTGAAGGAGCTAATGTTCTATCAGAGGTTGCTAAGCCTGAAAATGATCGCGGTGTTGATGAGCAGGTGGAGCTTGAGGTTGAAAAGAAAGATAGTAGTTCTGATCAACCAGTTGAAGATGATGAACATGAGAATCTAGAAGAAGCGGGAGCTTCTCAAGAGCAGCAACAGTATAGTATTGCCAAGGGTAGACCAAGAAGGCATATCAAACCACCTCAGAGATATGCTTATGCAGATTTAGTCTCATATGCACTATCTGAGAGATCCGCGGGAGAGTCCAGAGTCATCATCTTCTCCTCCTGCGGTGAAGTTGGATGTTGGAAACCACACTCATCAGgcagaccatatatatatatatatatatatataattttggagaATGATGGAGTTGTGATAGATAATGGACTCGTCCGCCTCACTTTGTCAACACCCGAGGGGTATGTCGTTGGAATATCATATAATGGTATTGACAACCTACTTGAAACCCAGAACCAACCAGAAGATAGAGGGTATTTAGACGTTGTTTGGAATGCACCGTCGCCCGACCCACAGAGTAGGTATATAATGCGAAGAGGCGATTCTGGATATTACTGGTACGCAATATTTGAGCGTAGAGAAGGATTTGCAGCCGTGGATGTTTTTCAAATCAGGATTGTGTACAAGCTCCAAGAAGACTTGTTCCATTATATGGCTATATCGGAGAGAAGGCAAAGAACGATGCCAACAGGTGCAGATCGAAAGAGCGGAGAGCGACTTGCTTATTCTGAAGCTGTTCGGTTGATCCACGCACAGAACCCAGATATTAGAGGAGAGgTGGATGACAAATACCAGTACTCCATTAAGAATGAAGATAACCGTGTTAATGGTTGGATAAGCTCTGATTCTAATTCTAAGGCCCACACCCACACCCACACGGGCTTCTGGCTTATAACCCCAAGTAATGAGTTTCGCAATGGTGGGCCCTTCAAGCAAGACCTTACCTCTCATGTTGGCCCCACCTGCCTTGCTATGTTTGTTAGCACCCACTATGCCGGGGAGCACGTGACGATGATTTTTGAAGAAGGGGAGACTAACAAGAAGGTTTTTGGCCCTGTTTTTGTCTATCTTAACTCTGCTAATTCTACCACGCCGGATCTCTGGTCAGATGCTCTTCGACAGggTTATCAATTCTGGACTCGAGCTGAACAGGATGGCAACTTCGCAATAAAAAATGTTGTGCCTGGGGACTATAATTTGTATGCATGGGTTCCTGGCTTTATTGGTAATTACAGATATAATGCTAATCTCACCATCACACCAGGTGGTGTTATTAAATTGGGTTCACTTGTTTATAGTCCTCCAAGAAATGGTCCTACCATTTGGGAGATTGGTGTCCCAGATCGATCAGCCGCAGAGTTCTATGTTCCCGACCCCTATCCTACACTCGTGAACAAATTATTCCTCAAAGACCAAAGAGACAAGTTTAGACAATATGGATTGTGGGAGCGTTATGCTGATTTATATCCGAAAGATGATCTTGTTTACAATGTTGGTGTCGATAAGTATGACGAGAAATGGTTCTTTGCTCATGTTAACAGAAACACAGGAAATAACACATACCAACCAACAATGTGgcaaattaaatttcaacttgAAAATAACACATTGGTAGGAAACTACACACTTCAACTAGCCTTGGCATCATCCCATGAGGCTCACTTGCAGGTTTGGTTGAATGATGAGAGGAGCGTTGGTCCCTACTTCGAAACAGGAAGAATAGGGAAAGATAATGCAATAGCAAGGCATGGAGTGCATGGATTGTATACGGCGTTGAGCGTTGAGATAACAAGTGATCGATTTGTAAAGGGAAACAATATTATGTATTTGAAGCAGTCAGGAGCCTCAAGTCCTTTCCAAGGCCTCATGTATGATTATCTCCGTTTAGAAAGCCCTCCAACTCCCACCACCTag 2781 0.4229 LVSELQDPVVMAAKFEIEKFNGNNDFSLWHVKMRALLVQQGLLKALEGKEALPTELSNQEKDDLLERALSTILLSLADDVLREVADEKSAAGLWLKLETLYMTKSLTNRLYLKQRLYTLRMKEGTPIKDHLAELNKVIMDLKNTDVKLDDEDQALILLCSLPHSYEHFVDTMLYGREALTMEDVKASLNSRELKRRVSENWSENQAEGLFGRGRNKERSFGNNRGKSRSKSKFRKGRCRYCKKKGHWKVECPKIKERKESADNAPSTSDTASVVVENFEGANVLSEVAKPENDRGVDEQVELEVEKKDSSSDQPVEDDEHENLEEAGASQEQQQYSIAKGRPRRHIKPPQRYAYADLVSYALSERSAGESRVIIFSSCGEVGCWKPHSSGRPYIYIYIYIILENDGVVIDNGLVRLTLSTPEGYVVGISYNGIDNLLETQNQPEDRGYLDVVWNAPSPDPQSRYIMRRGDSGYYWYAIFERREGFAAVDVFQIRIVYKLQEDLFHYMAISERRQRTMPTGADRKSGERLAYSEAVRLIHAQNPDIRGEVDDKYQYSIKNEDNRVNGWISSDSNSKAHTHTHTGFWLITPSNEFRNGGPFKQDLTSHVGPTCLAMFVSTHYAGEHVTMIFEEGETNKKVFGPVFVYLNSANSTTPDLWSDALRQGYQFWTRAEQDGNFAIKNVVPGDYNLYAWVPGFIGNYRYNANLTITPGGVIKLGSLVYSPPRNGPTIWEIGVPDRSAAEFYVPDPYPTLVNKLFLKDQRDKFRQYGLWERYADLYPKDDLVYNVGVDKYDEKWFFAHVNRNTGNNTYQPTMWQIKFQLENNTLVGNYTLQLALASSHEAHLQVWLNDERSVGPYFETGRIGKDNAIARHGVHGLYTALSVEITSDRFVKGNNIMYLKQSGASSPFQGLMYDYLRLESPPTPTT 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4230 926 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 663 922 - -
Sto6g4230 926 SUPERFAMILY Starch-binding domain-like 663 717 IPR013784 GO:0030246
Sto6g4230 926 CDD RGL4_C 731 919 - -
Sto6g4230 926 Pfam Rhamnogalacturonate lyase family 404 456 IPR010325 -
Sto6g4230 926 Pfam Rhamnogalacturonate lyase family 462 549 IPR010325 -
Sto6g4230 926 Pfam gag-polypeptide of LTR copia-type 66 196 - -
Sto6g4230 926 SUPERFAMILY Galactose-binding domain-like 726 919 IPR008979 -
Sto6g4230 926 SMART c2hcfinal6 237 253 IPR001878 GO:0003676|GO:0008270
Sto6g4230 926 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 461 663 - -
Sto6g4230 926 Gene3D - 726 919 - -
Sto6g4230 926 SUPERFAMILY Retrovirus zinc finger-like domains 221 259 IPR036875 GO:0003676|GO:0008270
Sto6g4230 926 SUPERFAMILY Galactose mutarotase-like 404 653 IPR011013 GO:0003824|GO:0005975|GO:0030246
Sto6g4230 926 MobiDBLite consensus disorder prediction 290 316 - -
Sto6g4230 926 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 401 456 - -
Sto6g4230 926 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 461 663 - -
Sto6g4230 926 CDD RGL4_M 641 719 IPR029413 -
Sto6g4230 926 CDD RGL4_N 402 651 - -
Sto6g4230 926 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 401 456 - -
Sto6g4230 926 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 663 922 - -
Sto6g4230 926 MobiDBLite consensus disorder prediction 212 231 - -
Sto6g4230 926 Gene3D - 211 267 - -
Sto6g4230 926 MobiDBLite consensus disorder prediction 284 344 - -
Sto6g4230 926 Pfam Polysaccharide lyase family 4, domain II 657 715 IPR029413 -
Sto6g4230 926 Gene3D - 402 661 IPR014718 GO:0030246
Sto6g4230 926 Pfam Polysaccharide lyase family 4, domain III 729 918 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4230 Sto-Chr6 45397019 45407529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4230 397 921 Polysaccharide Lyase AT1G09890 44.164 9.34e-166 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4230 K18195 - csin:114285579 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4230 6 45397019 45407529 Sto11g1271 11 12463658 12468581 CCT