Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4228 ATGGGAAGAGGGAAGATTGTGATCCGAAGGATCGACAATTCTACGAGCAGACAAGTGACTTTCTCAAAGAGGAGGAAGGGATTGATGAAGAAAGCCAAAGAGCTAGCAATCCTGTGTGACGCAGAAGTTGGACTTGTCATATTCTCCAGCACTGCCAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAGTAATTGAGAGATATAACACTTGCAAGGAGGAACATCAGCATCTGATGAATCCAGAATCGGAAGTCAAGTTTTGGCAAAGGGAGGCAGAATTATTAAGACAGCAACTACAGagtttacaagaaaatcatcgGCAATTGATGGGAGAACAGCTTTATGGTTTAAGCGTGAAGAATCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCGAGGTGTCCGCATGAAAAAGGAACAAATTCTAACAGATGAAATCCGAGAGCTGAATCAAAAGGGAAACCTTATCCATGAGGAAAATGTTGAACTCTATAAGAAGGTAAACCTCATTCGACAAGAAAACATGCAACTATACAAGAAGGTTTATGGCACAAGAGATGCTGCAGCAGCAAGCATAGATGCATTCAATCCATATGGAATTCATGCTGGAGAGGATCCACAAGAACTGATACAACTGCAATTAAGCCAGCCTGAGCAAGACACATATGAGACATCAGGGAGTGCCACAAAATGA 702 0.4074 MGRGKIVIRRIDNSTSRQVTFSKRRKGLMKKAKELAILCDAEVGLVIFSSTAKLYEYASTSMKSVIERYNTCKEEHQHLMNPESEVKFWQREAELLRQQLQSLQENHRQLMGEQLYGLSVKNLQDLENQLEMSLRGVRMKKEQILTDEIRELNQKGNLIHEENVELYKKVNLIRQENMQLYKKVYGTRDAAAASIDAFNPYGIHAGEDPQELIQLQLSQPEQDTYETSGSATK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4228 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Sto6g4228 233 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Sto6g4228 233 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 232 - -
Sto6g4228 233 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Sto6g4228 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 Coils Coil 123 143 - -
Sto6g4228 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto6g4228 233 Coils Coil 86 113 - -
Sto6g4228 233 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Sto6g4228 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto6g4228 233 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4228 Sto-Chr6 45379008 45385455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4228 1 231 MADS-box Gene Family AT2G22630 65.532 1.62e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto6g4228 K-box 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4228 K09264 - ming:122064455 350.517