Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4217 atggaGCTTACTCAACTTGGCTTTCTGGAGGAATTACTAGCTCCAAGAAGAGACACTTGGAACACTTTTTCCTCTGGTTTCAGCGACATATTCCCTACTGCTTGGACCTTTGACTCTTTTGAAGACAACCCACCTTTCCTTCCCTTAAatcccccattttcttcatttcccACCCCATTAGACCATAGATTTGAATGCCCCTACACTAAtgaagcagcagcagcagcataCCCATTTTTTGATGGGTTCACAGTACCAGAGCTTGACTCATCATACACCAGGAATGAAGATTCAGCACATTTTCCACCTCAAGAAAGTAACCCATCCATGGAGGACGAAGACTTGGGCTTTCTGGGCACTGAGAATCAGAGCCTTGGAGAAACAAACAATGCCTGCAAAATTGAGGAACAAGCCACAGAAGTTGCAGTGTTCAACATGGGTGTGTGTGGGGAGAAAAAACCCAAGTCCAAGAAGCTGGAAGGGCAGCCTTCCAAGAATCTCATGGcagaaaggagaagaagaaagcgTCTCAATGACCGCCTCTCCATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATAGATTACATGAAAGAGCTTCTAGAAAGGATCGGTAAGTTACAAGAAGAGAGAACAGAAGAGGGTATAGATCAGATGAACCTCTTGGGTAATACCAAGGACCTAAAGCCAAATGAAGTTATGGTAAGAAATTCTCCCAAGTTTGATGTTGAGAAGAGAGAGCAGGACACAAAAATTAGCATCTGCTGTGCCACAAGGACTGGATTATTACTGTCAACAGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCCGAGGTAGGTGAGCGGAGAACTAGTATTAGCCCTGAAGAGATAAAGCAAGCGCTATTCAGAAATGCAGTTTTTGACATTTCTACCCGTGCAGATGCTGCTCTTCTCCTAGCCTCTCGGTTGCATCTTCTAGCTTTGGTAGCATTAGGTTTGAGCAGCATGCTTGCAGAAAGTGGTAATTGTCCAAGGGGTGATGACTTCATAGTCTTTGCCTTTGATCGAGATCATACCTTCAAGAGATTTTGTCCTGTTGTGGCATGGCTTAGAGCTAACATTTTTCTCGATCAGAAGCCTCGGAGATCGTCTAAGGCTCTGAACATTGTTATTCACTCTGGTGGATTGTCCCGGCCCAGGAATCACATTCGCCGAATCACCCAAAGCCTTATCAGATTTACTCGATTTCTTTACACCTTTACGTGGGCAATCTTTAAGGTCCTGAAAGAAAACTTTCTGGCACGACAACCTGGGAGATCGTCTGAGACAGTGAAACCCATCAACCCCATTGTTCAATCTTCTCAACCCAGTTCGGTCGACAGTGTAATTTCTGGACTTGCTATGGGATTCGCTCGATTTTCCAGAAGACTTGTTCCTCGCGTCTTTATGGCTGTGCCGCAAAGAAACAGGTCAGAGGTCCTATTCTGGAGGAGAAGTCTTGCAGATCTTCGTGGCGTCGTGGATTCAATGGGGTGGATGAAGGATTTTCTGTTTGACATTTCCACAGACACTAGCTAG 1644 0.4288 MELTQLGFLEELLAPRRDTWNTFSSGFSDIFPTAWTFDSFEDNPPFLPLNPPFSSFPTPLDHRFECPYTNEAAAAAYPFFDGFTVPELDSSYTRNEDSAHFPPQESNPSMEDEDLGFLGTENQSLGETNNACKIEEQATEVAVFNMGVCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEERTEEGIDQMNLLGNTKDLKPNEVMVRNSPKFDVEKREQDTKISICCATRTGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVGERRTSISPEEIKQALFRNAVFDISTRADAALLLASRLHLLALVALGLSSMLAESGNCPRGDDFIVFAFDRDHTFKRFCPVVAWLRANIFLDQKPRRSSKALNIVIHSGGLSRPRNHIRRITQSLIRFTRFLYTFTWAIFKVLKENFLARQPGRSSETVKPINPIVQSSQPSSVDSVISGLAMGFARFSRRLVPRVFMAVPQRNRSEVLFWRRSLADLRGVVDSMGWMKDFLFDISTDTS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4217 547 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Sto6g4217 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Sto6g4217 547 MobiDBLite consensus disorder prediction 91 105 - -
Sto6g4217 547 CDD ACT_UUR-ACR-like 260 301 - -
Sto6g4217 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 224 IPR036638 GO:0046983
Sto6g4217 547 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 328 - -
Sto6g4217 547 SMART finulus 167 216 IPR011598 GO:0046983
Sto6g4217 547 PANTHER - 2 328 - -
Sto6g4217 547 MobiDBLite consensus disorder prediction 91 122 - -
Sto6g4217 547 Gene3D - 154 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4217 Sto-Chr6 45320922 45325951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4217 152 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.854 1.75e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g4217 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4217 - - gmx:100806571 493.041