Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4212 ATGTCTACGCCAGTGTTAGTTGCTGAGGAGGAAGGGCAGAGCGATATCTCAACAAAAGCATCTTCACCATCCGTGGACTCTATTTCCCATAATGGCTCTGCATTGAAAGAACGCAATTACTTGGGATTGTCAGATTGCTCTTCATCGGTTGACAGTTCTACTGTCCCAAGCATGTCGGATGCCAAAAAGGACAATCTTAATTTGAAGGCCACAGAGTTAAGGTTAGGTCTTCCCGGATCCCAGTCTCCAGAAAGGGATTCAGATCTTTATGTATTGAGCTCAAGAAAACTCGATGAGAAGCCACTGTTTCCTTTGCTTCCTTCAAAAGATGGAATCTGCTCACCATCCCAAAAAACTGTGGTTTCAGGAAACAAAAGAGGTTTCTCTGACACCATGGATAGGTTCCCTGAGTCTGTGGTGCAGGGGAACTTTCCTGGTAATTCAGGGATAAATGTAATGCTACCTAGATCCTCTGGAGCTCAGCCAACCTCGATGAAAGAAATGCCAGCCAAGGTTTTACAGGAACGGCCAAGTGCAGCTAATGGAACTGTTCATAACCATATAGGCGCTTCTGCTAATGGCAGTGCACCAGCTGCTAAGGCACAAGTTGTAGGTTGGCCTCCTATAAGATCGTATAGGAAGAACTCATTGGCCACCACGTCAAAGAACAATGACGAAGTAGATGGAAAGCCAGGTCCTACTGCTCTCTTTGTGAAAGTGAGCATGGATGGTGCTCCCTATCTAAGAAAGGTAGATCTAAGAAGCTATACAACATATCAAGAATTGTCTTCTGCCCTAGAGAAGATGTTCAGCTGTTTTACCCTAGgTCAGTGTGGTTCTCATGGAGCTCCTGGCAGAGAAATGTTAAGTGAGAGCAAGTTGAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTACGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCTTGGGAGATGTTCATTGATACATGCAAGAGGCTGAAAATTATGAAGGGCTCTGATGCCATTGGCTTGGCTCCCAGGGCCATGGAGAAATCCAAGAGCAGGAGCTAG 1068 0.4541 MSTPVLVAEEEGQSDISTKASSPSVDSISHNGSALKERNYLGLSDCSSSVDSSTVPSMSDAKKDNLNLKATELRLGLPGSQSPERDSDLYVLSSRKLDEKPLFPLLPSKDGICSPSQKTVVSGNKRGFSDTMDRFPESVVQGNFPGNSGINVMLPRSSGAQPTSMKEMPAKVLQERPSAANGTVHNHIGASANGSAPAAKAQVVGWPPIRSYRKNSLATTSKNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4212 355 MobiDBLite consensus disorder prediction 44 61 - -
Sto6g4212 355 PANTHER AUXIN-INDUCED PROTEIN 22 348 - -
Sto6g4212 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 348 IPR003311 GO:0005634|GO:0006355
Sto6g4212 355 Pfam AUX/IAA family 71 346 IPR033389 -
Sto6g4212 355 MobiDBLite consensus disorder prediction 1 33 - -
Sto6g4212 355 ProSiteProfiles PB1 domain profile. 235 339 IPR000270 GO:0005515
Sto6g4212 355 MobiDBLite consensus disorder prediction 14 33 - -
Sto6g4212 355 MobiDBLite consensus disorder prediction 44 63 - -
Sto6g4212 355 SUPERFAMILY CAD & PB1 domains 233 336 - -
Sto6g4212 355 Gene3D - 232 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4212 Sto-Chr6 45295574 45298182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4212 237 340 B3 DNA Binding Superfamily AT5G37020 32.692 7.07e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto6g4212 AUX_IAA 3.9e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4212 K14484 - gmx:100500373 546.584