Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4187 ATGAACCCCACCACAACCCTTTGCTTCCAACTATGCTCTGCTCTGCAAGAAGCACCAACTGAAGAGAAACCGCTGGAAACAGACGAAACTAACGTCAAGAAGAAGCTTTACGTGTTTAATTTACCATGGTCCTTCTCCGTGGTCGACATCAAAAACCTCTTTGGTCAATGCGGATCTGTCACCGACGTCGAGATAATAAAAAGCAAAAATGGGAGGAGCAGAGGATTTGCCTTCATCACTATGTCGTCCGGGGAAGAGGCTCAGGCTGCTATTGATAAATTTGATTCTCATGAATTGTCAGGCCGGATGATAAAGGTAGAGCTTGCTAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTCCAAGTCCTCCTCCTGCTGGCAAGACACGCCATAAAATTTATGCTTCCAATCTTTCATGGAAAGCGAGATCTACCCATCTCAGAGAATTCTTCACAGAGAATTTCAAAGCACCAGTGTCAACCAGGGTTGTCTTTGACAGCCCTTCCGGAAGATCTGCTGGGTATGGATTTGTTTCTTTCGCCACAAAGGATGAAGCAGAGGCTGCCATTTCTACTTTGGATGGGAAGGAACTAATGGGACGACCACTTCGCCTAAAATTCAGTCAAAAGAATGTTGAAGAATCTGGAAATGaaaaagaggaagaacaagGTCATGATGGTCAACTGCAAGAATCATAG 699 0.4421 MNPTTTLCFQLCSALQEAPTEEKPLETDETNVKKKLYVFNLPWSFSVVDIKNLFGQCGSVTDVEIIKSKNGRSRGFAFITMSSGEEAQAAIDKFDSHELSGRMIKVELAKRFKKPPPPRPPSPPPAGKTRHKIYASNLSWKARSTHLREFFTENFKAPVSTRVVFDSPSGRSAGYGFVSFATKDEAEAAISTLDGKELMGRPLRLKFSQKNVEESGNEKEEEQGHDGQLQES 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4187 232 MobiDBLite consensus disorder prediction 111 130 - -
Sto6g4187 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Sto6g4187 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 210 IPR000504 GO:0003723
Sto6g4187 232 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Sto6g4187 232 PANTHER CHLOROPLAST, PUTATIVE-RELATED 4 225 - -
Sto6g4187 232 SUPERFAMILY RNA-binding domain, RBD 114 213 IPR035979 GO:0003676
Sto6g4187 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 204 IPR000504 GO:0003723
Sto6g4187 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 104 IPR000504 GO:0003723
Sto6g4187 232 SMART rrm1_1 35 107 IPR000504 GO:0003723
Sto6g4187 232 SMART rrm1_1 132 206 IPR000504 GO:0003723
Sto6g4187 232 Gene3D - 121 232 IPR012677 -
Sto6g4187 232 Gene3D - 13 120 IPR012677 -
Sto6g4187 232 PANTHER OS02G0815200 PROTEIN 4 225 - -
Sto6g4187 232 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4187 Sto-Chr6 45121127 45123748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4187 133 216 Eukaryotic Initiation Factors Gene Family AT4G34110 31.395 9.40e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4187 6 45121127 45123748 Sto6g4187 6 45121127 45123748 ECH