Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4186 ATGGCTCTGCTTGAAACTCTTTCGTCTAATGAGCTTTTCAACTTCATCATCTATGACACTATCTCTGCAACTCCATTTAACAACCATGATATCTCTTCCTCAGAGCCTACTTTCTTAGTAGAAACCAGAGTGAAACCTCAGGAACATGACCCTTCTTCATCATTCAACAACAATAATATTGATCACTCTTCACGAAAACGCCAATCTGCTGAACCTCAAGTACAACAAGGGAggaggaagagaagaagaaagccaAGGGTTTGCAAGAACAAGGAAGAGGCTGAGACACAAAGGATGACTCACATTACTGTTGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTTGCTGTTCTGCGTTCACTCATGCCTGAATCCTACGTCCAAAGGGGAGACCAAGCCTCTATAGTGGGTGGTGCTATAGAGTTTGTGAAAGAGCTTGAGCATCTCTTGCAGTCACTTGAAGCTAAGAAGTTGCAGATTCTACAACAATCTAATGAAGACTCAACCATTTTGAAACTGATGAGACCCCCTTTTGCACAATTTTTTGTGTATCCTCAGTACACATGGTCTCAGGCTCCTAACAAATACACATCCAAAACTCAGGCTGCCATAGCTGATATCGAGGTCACTTTGATAGAGACACATGCAAACCTTAGAATTCTGTCACGGAAAAGCCCCAGGCAGTTGTCACAATTAGTTGCTGGTTTTCAAGCACTCAGCCTCACCATCCTTCATCTTAACGTCACCACTATGGACCCTTTGGTGCTCTACTCTATCAGTGCCAAGGCTCTCATCTTCTTCAAACTCACTGAGACAAACAGAGCAATCTGTGACTCCCACCAACCCTTCTGCTTTCTTGTACTTGCACACCGTAATGGACTTGATCAGAGCTTCATCCAAGCCGTTGGTAGAGACATGCCATGGCTCGTGCAAGGAAGGGTTGTGATTATCTTGGATTTCGTCATCTGGGTTTTGATTGTGTGTGGAAGAAGATTGTGTGTTCCCAGCACAGTACTTGGAAATGAAGGTGTAGTAACTCACCAGAAGAAAAGCACTGACCAAGATGCCAATAATGGCTATGACGAGGGGAGAGAAATTAGGGGTGGAATCATTGTGATCTTGAGGGAATTCGAAggtgggaggaggaggaggaggagggtaCACTATGTAACACCACTGAGGACAATTCAAGCTACAAAAGCCTTGGGAACAGTCTTTGTTGTTCATGTATGGAACCCAAGTTCTTGGATTGCCAAGTGA 1263 0.4212 MALLETLSSNELFNFIIYDTISATPFNNHDISSSEPTFLVETRVKPQEHDPSSSFNNNNIDHSSRKRQSAEPQVQQGRRKRRRKPRVCKNKEEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAKKLQILQQSNEDSTILKLMRPPFAQFFVYPQYTWSQAPNKYTSKTQAAIADIEVTLIETHANLRILSRKSPRQLSQLVAGFQALSLTILHLNVTTMDPLVLYSISAKALIFFKLTETNRAICDSHQPFCFLVLAHRNGLDQSFIQAVGRDMPWLVQGRVVIILDFVIWVLIVCGRRLCVPSTVLGNEGVVTHQKKSTDQDANNGYDEGREIRGGIIVILREFEGGRRRRRRVHYVTPLRTIQATKALGTVFVVHVWNPSSWIAK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4186 420 Pfam Helix-loop-helix DNA-binding domain 97 148 IPR011598 GO:0046983
Sto6g4186 420 Coils Coil 144 164 - -
Sto6g4186 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 166 IPR036638 GO:0046983
Sto6g4186 420 SMART finulus 102 153 IPR011598 GO:0046983
Sto6g4186 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
Sto6g4186 420 MobiDBLite consensus disorder prediction 49 63 - -
Sto6g4186 420 Gene3D - 88 166 IPR036638 GO:0046983
Sto6g4186 420 PANTHER TRANSCRIPTION FACTOR BHLH71 1 275 - -
Sto6g4186 420 CDD bHLH_AtFAMA_like 99 158 - -
Sto6g4186 420 PANTHER MAX DIMERIZATION, MAD 1 275 - -
Sto6g4186 420 MobiDBLite consensus disorder prediction 43 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4186 Sto-Chr6 45112325 45118448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4186 88 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 56.667 1.09e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g4186 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4186 - - pvu:PHAVU_003G284500g 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4186 6 45112325 45118448 Sto6g4186 6 45112325 45118448 ECH