Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4184 ATGGATTATGGTCGAGATGGAAACGTCGTTCAAATAATCACCGGTGGTGGAAATGAAAACTGGTCCGGCGACCAGGCGGTTTGGGCAACAGAAGAGGATTATCGATTCTGGAACAACGGCGATTCCGACACTCCCACCAACTCCAATTACGATCAGAGGCAGTCCCAATCGCGATCGGGAAGCGAACCCCCAAACAAGAAATCTAGGAATTCTCAGGATGTGACATCCTCGAATCGGTCCAAGGCAATAGGGAAAATGTTCTTCAAGACAAAACTGTGTTGCAAATTCCGGGCGGGGACGTGCCCGTACATTACAAACTGCAATTTCGCTCACAGTATCGAAGAGCTTCGTCGGCCGCCTCCGAATTGGCAGGAAATCGTGGCTGCCCACGAAGAGGAAAAGTGCATAATATCGGAACCCAGGGAGGAATTTCAGATTCCGTCCGTTGCGTCGTCGGGGTTTTCAGGGGAGATGCAGAGGGCGTATAAAGGTCGACATTGCAAGAAGTTTTACACGGAAGAAGGGTGCCCCTATGGAGATAATTGTACATTTCTTCATGATGAGCAATCTAGGAATCGAGAGAGTGTGGCTATAAGTTTAGGCCCTGGTGGGTATGGTGGTGCTGCGAGTGGATCCAATTCCAAGCCATCAAATTGGAAAACAAGGATTTGCAATAAGTGGGAGATGACTGGGTATTGCCCTTTTGGAAATAAATGCCATTTTGCTCATGGTTCTGCAGAATTACTCCGATTTGGAGGGGGTTCCATGGAGACAGAAAATAGAGAGACTGCTTCTGCTGACACAAAGCAAGGAGGGGTACCTTCAAAAAGTGCTGCTGATAATATGGTTGCATCAGTTACTCCAGTTGCTCATTCCGATGGCTATCATATCGGTGTTCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGTCAGAGAGCTCATCAGAAGTGGAAGGGTCCAGATAAAATTAGTAGGATATATGGTGATTGGATTGATGAGTTGGAATAA 1014 0.4734 MDYGRDGNVVQIITGGGNENWSGDQAVWATEEDYRFWNNGDSDTPTNSNYDQRQSQSRSGSEPPNKKSRNSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKCIISEPREEFQIPSVASSGFSGEMQRAYKGRHCKKFYTEEGCPYGDNCTFLHDEQSRNRESVAISLGPGGYGGAASGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGSAELLRFGGGSMETENRETASADTKQGGVPSKSAADNMVASVTPVAHSDGYHIGVPSQRPSIVIQRPGQRAHQKWKGPDKISRIYGDWIDELE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4184 337 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Sto6g4184 337 MobiDBLite consensus disorder prediction 34 78 - -
Sto6g4184 337 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Sto6g4184 337 SUPERFAMILY CCCH zinc finger 161 189 IPR036855 GO:0046872
Sto6g4184 337 Gene3D - 82 118 - -
Sto6g4184 337 Gene3D - 211 250 - -
Sto6g4184 337 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 16 334 - -
Sto6g4184 337 SUPERFAMILY CCCH zinc finger 216 248 IPR036855 GO:0046872
Sto6g4184 337 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 334 IPR045877 GO:0003729
Sto6g4184 337 Gene3D - 155 201 - -
Sto6g4184 337 MobiDBLite consensus disorder prediction 39 78 - -
Sto6g4184 337 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Sto6g4184 337 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Sto6g4184 337 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Sto6g4184 337 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Sto6g4184 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Sto6g4184 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 244 IPR000571 GO:0046872
Sto6g4184 337 MobiDBLite consensus disorder prediction 256 277 - -
Sto6g4184 337 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Sto6g4184 337 MobiDBLite consensus disorder prediction 258 275 - -
Sto6g4184 337 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4184 Sto-Chr6 45101425 45103652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4184 220 248 C3H Transcription Factor Family AT1G68200 62.069 4.38e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto6g4184 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4184 - - qsu:112034888 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4184 6 45101425 45103652 Sto6g4184 6 45101425 45103652 ECH