Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4181 ATGGGGAAAAAGAGACCCAAGGAGCCACAGGAAACCCCCAAAACGAACGGTACTTCGGCCTCTTCCGACATTTTTAACAAGCTATTTGGTAACGTGTCTGAACAGAGCGCCAAATCTTCTTTATTCTCTGAAGAAAACCCGTTTCGGAGGAAGCCTCTAGAATCTGGTTCAAGTTTCGCTTCAATTAAAAATCCTGAAAATGCTAGCAACGTACTCTCCGATAACGATGATTCTGGTGAgctgaagaagaggaagaggaccAAAGAGAAGAAATCGGCTGTTGATTCAGATAATGAACTTGAAGCGTCAGGGAAGAATTCGAAACCGCAGAGTGATGAGACCCAATACTTTGATTCGGGTGCGCAAACAACTGCATTGTCGAAAAAAGAGAATCTCATGTCAACGGAAGGTGggGACGAAGTTGAGAAAGAGTGGGAATCAAAGAAGTATGGGGCAGTAGAGAAAGAGGGAGATGATGGGGGCTTAGGAAATAAAATTGTTGGGATCAAGAGGAAGACGGTGGATAATCCAGCGGATATGTTGGTCGAAAATGAAGGTTTTGACGACGAGATTAAGCTCGTAAGAACCATATTTGTCGGGAATTTGCCGCTCAAGGTGAAAAAGAAGACTTTATTGAAGGAGTTTAAGAAATTTGGGGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATATTGGATACCAAAAAACCTCGGAAGGGAGCTATCCTTTCGAAGAAAATCAATGATTCTGCTGACAGTGTTCATGCATACATTGTTTTTAAAACAGAGCAGTCTGCTCAGGCTTCCTTGACCCACAATATGGCTCTGGTAGGAGGAAATCACATTCGTGTTGATAGAGCATGCCCGCCCCGCAAGAAGCATAAAGGAGAGAGTGTTCCACTTTATGATAACAAGAGGACCGTTTTTGTTGGCAACCTCCCATTCGATGTAAAGGATGAAGAATTATATCGACTATTTTCTGGTATAGCCAACCTGCAATCCAGCATAGAAGCTGTTAGAGTCATTAGAGATcctcatatgagtgttggaaaGGGTATTGCCTATGTGCTGTTCAAAACAAGGGAAGCTGCTAATTCTGTTGTTAAGAAACGGAACTTGAAGCTTCGAGATCGAGAGCTGAGACTCTGTCATGCCAGAGCTGATTCCACCCCATCCAAAAGGCCAAACATGTCGCAAGCTTCTGGTACCCCTGCAAAGAAGGCAGCCATGGCTTCAAGATCTCCTTCAAGCAGTGATAACAGGACtaataaaaaatctaatatgTCATACCAAGGTTTGCGAGCAACCAAAACTGTCGTCCATAAGAaatcaaaatccaaaacccatgGAGAGCAACCAACAGTGCGCCAGACAAAAAGACCATCAGTTGCTGCCAGAAAGGctaaattgaaatcaaaattgGTCAAGGATGATGGTCCCTCAAAACAAGCAGGAATAAAACGCAAGTTTGATAGTCGAACACCAGATAGCTCCCAACGAAATAAGAAAGTTAAGAAGAATAGGTAA 1527 0.4073 MGKKRPKEPQETPKTNGTSASSDIFNKLFGNVSEQSAKSSLFSEENPFRRKPLESGSSFASIKNPENASNVLSDNDDSGELKKRKRTKEKKSAVDSDNELEASGKNSKPQSDETQYFDSGAQTTALSKKENLMSTEGGDEVEKEWESKKYGAVEKEGDDGGLGNKIVGIKRKTVDNPADMLVENEGFDDEIKLVRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPILDTKKPRKGAILSKKINDSADSVHAYIVFKTEQSAQASLTHNMALVGGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYRLFSGIANLQSSIEAVRVIRDPHMSVGKGIAYVLFKTREAANSVVKKRNLKLRDRELRLCHARADSTPSKRPNMSQASGTPAKKAAMASRSPSSSDNRTNKKSNMSYQGLRATKTVVHKKSKSKTHGEQPTVRQTKRPSVAARKAKLKSKLVKDDGPSKQAGIKRKFDSRTPDSSQRNKKVKKNR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4181 508 MobiDBLite consensus disorder prediction 12 43 - -
Sto6g4181 508 SMART rrm1_1 196 285 IPR000504 GO:0003723
Sto6g4181 508 SMART rrm1_1 307 383 IPR000504 GO:0003723
Sto6g4181 508 MobiDBLite consensus disorder prediction 76 102 - -
Sto6g4181 508 CDD RRM2_RBM34 307 382 IPR034221 -
Sto6g4181 508 PANTHER RNA-BINDING PROTEIN 34 40 506 - -
Sto6g4181 508 Gene3D - 295 411 IPR012677 -
Sto6g4181 508 MobiDBLite consensus disorder prediction 103 131 - -
Sto6g4181 508 SUPERFAMILY RNA-binding domain, RBD 303 400 IPR035979 GO:0003676
Sto6g4181 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 289 IPR000504 GO:0003723
Sto6g4181 508 MobiDBLite consensus disorder prediction 1 146 - -
Sto6g4181 508 CDD RRM1_RBM34 195 285 IPR034220 -
Sto6g4181 508 Gene3D - 192 294 IPR012677 -
Sto6g4181 508 MobiDBLite consensus disorder prediction 57 75 - -
Sto6g4181 508 MobiDBLite consensus disorder prediction 470 502 - -
Sto6g4181 508 MobiDBLite consensus disorder prediction 384 508 - -
Sto6g4181 508 SUPERFAMILY RNA-binding domain, RBD 192 295 IPR035979 GO:0003676
Sto6g4181 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 387 IPR000504 GO:0003723
Sto6g4181 508 MobiDBLite consensus disorder prediction 391 434 - -
Sto6g4181 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 239 IPR000504 GO:0003723
Sto6g4181 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 380 IPR000504 GO:0003723
Sto6g4181 508 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 40 506 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4181 175 386 Eukaryotic Initiation Factors Gene Family AT1G22760 24.545 3.84e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4181 K14837 - gmx:100784494 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4181 6 45079122 45082511 Sto6g4181 6 45079122 45082511 ECH