Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4178 ATGGGTAGGGTTCCCTGCTGTGATGAGAGTAGTGGAGTAAAGAAAGGGCCATGGACAGCAGAAGAAGATGAGAAGCTTATGGATTATATCAGCAAACATGGCCAAGGAAATTGGAGAACACTCCCAAAGCGTGCTGGTCTCAATAGGTGTGGCAAGAGCTGTAGGCTCAGGTGGACTAATTATCTCAGGCCTGATATTAAGAGAGGCAAGTTTACTGAAGAAGAAGAGCGATTGATCATCAACCTTCATTCTGTTCTGGGTAACAAGTGGTCAAAGATTGCAACCCATCTTCCAGGTAGAAcagataatgaaataaaaaactttTGGAATACTCACATAAGGAAGAAGCTACTTCAGATGGGTATTGATCCGGAAACTCACAAGCCTAGGACAGACTTGAATCACCTTATCAATCTCACTCACCTCCTTGGCATTTCATCGAACAATATGGCTGCATGggataaaagtaatattaatccTCTCAATCCACAGCTAGATATCACAACTCAGATAACCAAAATCCAACTTCTGCAAAACCTACTTCAAATTGTGAATACAAACCCTTACCTCTCAGTCTCAGGCATCAATCACAGCCCCAATCCACTTCAACTTGAAGGATATGCAAACAGTAATGTTGGTCTGTTATACCCTCAACCACACGCTCAATCTCTTGAAGCTATTTCAACATTATCCACAGATCACGGAGGAAGATTATGTGGtttcaacaataataataataataataataataataatattccaCATCAGAAGCAGCAGTACTCATCAGAAATGGCGCTTCCTGCATTAGTCTCCGCTGGAGAACAAGTGTCCACCCATCACTCGCCTGATACCTCCACATTCTTCGAGGGTTGGGAGAAGTTCCTCCTCGACGATGCCAGTGCTTCTGATTGGAAAGAAATTCTAGAATTGGTAGAGAACAGAAATACTGAATAA 954 0.4004 MGRVPCCDESSGVKKGPWTAEEDEKLMDYISKHGQGNWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTHIRKKLLQMGIDPETHKPRTDLNHLINLTHLLGISSNNMAAWDKSNINPLNPQLDITTQITKIQLLQNLLQIVNTNPYLSVSGINHSPNPLQLEGYANSNVGLLYPQPHAQSLEAISTLSTDHGGRLCGFNNNNNNNNNNNIPHQKQQYSSEMALPALVSAGEQVSTHHSPDTSTFFEGWEKFLLDDASASDWKEILELVENRNTE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4178 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 310 - -
Sto6g4178 317 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Sto6g4178 317 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Sto6g4178 317 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Sto6g4178 317 Gene3D - 14 67 - -
Sto6g4178 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Sto6g4178 317 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto6g4178 317 Gene3D - 70 117 - -
Sto6g4178 317 PANTHER MYB TRANSCRIPTION FACTOR 1 310 - -
Sto6g4178 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sto6g4178 317 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Sto6g4178 317 SMART sant 14 64 IPR001005 -
Sto6g4178 317 SMART sant 67 115 IPR001005 -
Sto6g4178 317 CDD SANT 70 113 IPR001005 -
Sto6g4178 317 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4178 Sto-Chr6 45054248 45055492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4178 1 198 MYB Transcription Factor Family AT5G16770 65.196 2.02e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto6g4178 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4178 K09422 - gmx:100810159 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4178 6 45054248 45055492 Sto6g4178 6 45054248 45055492 ECH