Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4174 ATGCCAAGGAGGAGTGAGAGGCCTGGCCCTCGTGTTCAGGAGGATGAGATTTGTTTAACCTCAACTTCTCCGTCACAACCTCCTGGACCTCCTTCCTACAACACCCAACCCAAACCACGCCACTCCCAACCCAGGCGGCGGAATCAAGGTGAAAAGGTTAAACTCCGCTTCGTCAACAAGTCTCAGTTGGCTTCTTCTATTTCTGAGGTTGATCATTCTCTTGAAGAGTTGATCATCAGCGACGAGAATGATGTCGCACCAGAAATTAACCATGGGAACCAGGACGGTCCGGAGTTGAAGACTGAAGTGAGAGATGAGAGGGAGGATATGGCTGATTTGGGGAAGGATGGGTATAGCATTCAAAGTAGATTGGATAAGTTACTGAGGGATGTGGGAGAGCCGGAATTGTCGGAGGAGCAGCGGAGTATCAATGACCAATTGCAGGAATATGAGTTACTTGCACTAGAGTCAATTTATGGAGAAAATGTCTTCAACCTCGAGAGGTGGAAAGGTCTCCGTTGTTTTCAGATACACATACACATTGAAGTTTTGGATGAAATTACCCTCACTGCGAAGCTGAATTCTTCCAATGAACCTAAGACCTCAGGCAGCAATTCAGATGACTTCTCATACTCTTTCAAAGTCCACTATCTTCCACCGATTATTTTGACATGTTTATTGCCTAAGTCATATCCAAGCCATCAACCACCTGTTTTTATAATCTCTGTTAAGTGGTTGGACCCTGTAAGAATTTCCAGTCTATGCTCCAAGTTGGATTCTATATGGGCTGAGCAGCAAGGGCAGGAAGTTATATACCCGTGGGTAGAATGGCTTCATGGTTCTTCTCTTTCTCATATGGGATTTGATAAAGAAATTACTCTGGGTCCTTATGGCATGAAACATGTTGGAGATGAGCGTGCTGTTTCTGGAGCTGTGTCCGTCGATGTTGATATTCCTTTGATACGAAATTACAACAATGAGAGACACCACGAGAACTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTTTAGTACATATGCAgGGGCGGAGTTTGCTCGATTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTTACTCATATGCATGTAAAAGAAGGCACCATTAATAATCTTCAATGTCCTGATTCAAAATGTGCTGTTATGATTCCACCTGGTCTGTTAAAACGCTTGCTTGGTGGTGAAGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAAGACACTTGCATCAATGGCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGACCAGCATGCTCAATGTTCCAAATGCttctttagcttttgtaccCTTTGTAGGGAGCGGCGCCATGTTGGCATAGCATGCATGACAGTTGATATGAAGCTTCGTATTTTGCAAGAGCGCCAGAATTCATCTCAATTAAAGGAAGATCAAAAGCTTAGGGAACGCGAAAAGATTAATGAAATGCTCAGCATCAAAGAAATTCAACGTGATTCTAAGCTGTGCCCTTCTTGTCAAATGGCTATTTCCCGAACTGAAGGTTGCAATAAAATGGTGTGTGGTAATTGTGGCCAATATTTCTGTTACCGCTGCAACAAAGAAATCGATGAGTCTGATCCATATGGACATTTCAGGGATGGGTCCTGTGAGCTGTTCCCACAAGAAATGGTAGAGGCTTGGCAAGAACGCATAAACCCCCGCCAAGTGGTAGGACAAATACAAGCTGAACTCTTTTTTCAACGAGGCCAGCGATGTCCTAATTGTCGTCAATTTAATGCAAAGGGATCTTCTGAGCATGCACGATTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTATTGCTATTTATGCAAGGAGATTGTTAGGCGTAGCGCGCAGCATTATGGACCCAGGGGTTGCAAACAACACACAGAGGATTAGTAGGGAGCACATGGAAACTTACTATATGCTAATGGAAATGAACTTGTTAGAAATGGAGTCTACTAGAGAGTTGCTTGACAAATTCTATGTAACTCTTTCCGATATACAATAG 2076 0.4287 MPRRSERPGPRVQEDEICLTSTSPSQPPGPPSYNTQPKPRHSQPRRRNQGEKVKLRFVNKSQLASSISEVDHSLEELIISDENDVAPEINHGNQDGPELKTEVRDEREDMADLGKDGYSIQSRLDKLLRDVGEPELSEEQRSINDQLQEYELLALESIYGENVFNLERWKGLRCFQIHIHIEVLDEITLTAKLNSSNEPKTSGSNSDDFSYSFKVHYLPPIILTCLLPKSYPSHQPPVFIISVKWLDPVRISSLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHMGFDKEITLGPYGMKHVGDERAVSGAVSVDVDIPLIRNYNNERHHENFLKELHECCICFSTYAGAEFARLPCQHFFCLKCLQTFTHMHVKEGTINNLQCPDSKCAVMIPPGLLKRLLGGEEYERWESLMLEKTLASMADVAYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTVDMKLRILQERQNSSQLKEDQKLREREKINEMLSIKEIQRDSKLCPSCQMAISRTEGCNKMVCGNCGQYFCYRCNKEIDESDPYGHFRDGSCELFPQEMVEAWQERINPRQVVGQIQAELFFQRGQRCPNCRQFNAKGSSEHARLETIITCFAGHAKAIIAIYARRLLGVARSIMDPGVANNTQRISREHMETYYMLMEMNLLEMESTRELLDKFYVTLSDIQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4174 691 ProSiteProfiles Zinc finger RING-type profile. 340 388 IPR001841 -
Sto6g4174 691 SUPERFAMILY RING/U-box 499 555 - -
Sto6g4174 691 SMART ring_2 340 387 IPR001841 -
Sto6g4174 691 SMART ring_2 513 599 IPR001841 -
Sto6g4174 691 Pfam IBR domain, a half RING-finger domain 408 466 IPR002867 -
Sto6g4174 691 Pfam IBR domain, a half RING-finger domain 503 547 IPR002867 -
Sto6g4174 691 Gene3D Ubiquitin Conjugating Enzyme 137 286 IPR016135 -
Sto6g4174 691 Gene3D - 480 593 - -
Sto6g4174 691 SUPERFAMILY RING/U-box 408 471 - -
Sto6g4174 691 ProSiteProfiles RWD domain profile. 150 285 IPR006575 GO:0005515
Sto6g4174 691 SUPERFAMILY UBC-like 144 279 IPR016135 -
Sto6g4174 691 SMART ibrneu5 495 560 IPR002867 -
Sto6g4174 691 SMART ibrneu5 408 466 IPR002867 -
Sto6g4174 691 SUPERFAMILY RING/U-box 335 419 - -
Sto6g4174 691 MobiDBLite consensus disorder prediction 1 53 - -
Sto6g4174 691 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 129 587 IPR031127 GO:0004842|GO:0016567
Sto6g4174 691 ProSiteProfiles TRIAD supradomain profile. 336 565 IPR044066 -
Sto6g4174 691 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 129 587 - -
Sto6g4174 691 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Sto6g4174 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 422 IPR013083 -
Sto6g4174 691 Pfam RWD domain 147 279 IPR006575 GO:0005515
Sto6g4174 691 SMART RWD2001b 150 285 IPR006575 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4174 304 570 C3H Transcription Factor Family AT2G31770 24.364 6.35e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4174 K11971 - gmx:100500662 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4174 6 45015446 45020792 Sto6g4174 6 45015446 45020792 ECH