Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4171 ATGGACGGAGCAAGTAACAGCGGTGGAGATGGTGGCGACACTCAGATGGCAGCTCCGGCGCCGGCTCCCATTTCTAATGCCAACGCTCCGCCGCCGTTCCTCAGTAAGACGTATGACATGGTGGATGACCCTTCCTCTGATGCGATCGTGTCTTGGAGTCCAACCAACAACAGCTTCGTGGTTTGGAACCCACCCGAGTTTGCCAGGGACCTGTTGCCTAAATACTTCAAGCATAATAATTTCTCCAGCTTTGTTAGGCAGTTGAACACTTATGGTTTTAGGAAGGTGGATCCAGATCGCTGGGAATTTGCTAATGAGGGCTTTTTAAGGGCTCAGAAGCACTTGCTTAAGAGTATAACTCGACGAAAACCTGCCCATGGTCAGAGTCATCAACAAACACAGCAATCACAAGCACAAAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAAGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTTATGCAGGAGCTTGTGAGGTTGAGACAGCAGCAACAAGCCACTGATAACCAGCTGCAGACCATGGTTCAGCGCCTTCAGGGAATGGAGCAACGGCAGCAGCAAATGATGTCATTCCTCGCCAAGGCGGTTCAGAGCCCTGGCTTTTTGGCTCAATTTGTACAACAGCAGAATGAGAGCAACAAGCGACTAACTGAAGCCAACAAAAAACGACGACTTAAGCAGGAAGGTATTTCTGAAACAGAGCATGCTACTGCTTCTGATGGACAAATTGTTAAGTATCAGCCTCTGATGAATGAAGCAGCAAAAGCAATGCTAAGACAGATGATGAAATTGGATACTTCTCGGATGGAATCTTTTAATAACAACCAAGATAATTACATGATTGGTGATGGTTCATCATCATCCAGCGCAATGGACAGCAGTAGCTCTTCAAGCTGGACATCTGGAGTAACACTTCAAGAGGTCCAACCAACTTCAGTGCAGTCTTCTCACATTCCAGCTGCATCAAGGACTTTGGTACCCTCAGCTGTCAAATCTGAAATTCAAGCTACACAACCTGCAGCTTCTATCTCGGTTCCTCAGGTAGATGTCATCATGCCTGAGCTTTCTTCAATACCAGAGATAGTGTCAGGAAGTATGATGAATATTCCGGAAGAAAATTATGTTGGACCTGAGGTGGACAATGTGGATCCTACTTCATTGGGAGGGAATGGGCAATTGCCCACGGATATGGGTATTTCACCTGATACAGACATTGATGAGTTGTTACGCAATCCTTCCTTTTGGGATGATTTTCTTTTACAAAGTCCATTGCCAGAGGATATCGAGAACAATGATGCTGAAGCAGCGTCCAAGGGGAATGGGGTGCAGCCAATGGAAAATGGATGGGACAAAGCGGAGCACATGAGCCAACTTACAGAGCAGATGGGACTTCTTTCGTCTGATGCAAAAGGAGTTTGA 1464 0.4631 MDGASNSGGDGGDTQMAAPAPAPISNANAPPPFLSKTYDMVDDPSSDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRAQKHLLKSITRRKPAHGQSHQQTQQSQAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNKRLTEANKKRRLKQEGISETEHATASDGQIVKYQPLMNEAAKAMLRQMMKLDTSRMESFNNNQDNYMIGDGSSSSSAMDSSSSSSWTSGVTLQEVQPTSVQSSHIPAASRTLVPSAVKSEIQATQPAASISVPQVDVIMPELSSIPEIVSGSMMNIPEENYVGPEVDNVDPTSLGGNGQLPTDMGISPDTDIDELLRNPSFWDDFLLQSPLPEDIENNDAEAASKGNGVQPMENGWDKAEHMSQLTEQMGLLSSDAKGV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4171 487 Gene3D - 25 123 IPR036388 -
Sto6g4171 487 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 8 473 - -
Sto6g4171 487 MobiDBLite consensus disorder prediction 290 318 - -
Sto6g4171 487 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g4171 487 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g4171 487 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g4171 487 MobiDBLite consensus disorder prediction 449 487 - -
Sto6g4171 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 473 IPR027725 -
Sto6g4171 487 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g4171 487 Coils Coil 151 178 - -
Sto6g4171 487 MobiDBLite consensus disorder prediction 121 141 - -
Sto6g4171 487 MobiDBLite consensus disorder prediction 230 248 - -
Sto6g4171 487 MobiDBLite consensus disorder prediction 1 36 - -
Sto6g4171 487 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Sto6g4171 487 MobiDBLite consensus disorder prediction 225 252 - -
Sto6g4171 487 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto6g4171 487 MobiDBLite consensus disorder prediction 125 141 - -
Sto6g4171 487 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4171 Sto-Chr6 45003471 45005546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4171 4 481 HSF AT1G32330 54.234 1.29e-170 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto6g4171 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4171 K09419 - gmx:100815121 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4171 6 45003471 45005546 Sto6g4171 6 45003471 45005546 ECH