Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4170 ATGAGCTTTCAGGATATCGAAGCCGGTCGGCCTTTCGCTTCGAGGCGAGACCTAATCAATGGCAAGCAAGATCCTACGCAGGCGGTGGCGTCCGGTATATTTCAGATCAACACTGCCGTGTCCACGTTTCAGAGGCTGGTCAACACCCTTGGAACCCCCAAAGACACGCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGACTACATATTGGGCAGTTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGAATTAGATCACCATGTTGAAGTTAATGTAAGTTTGGACCTTAATCATTGCTTCATATTCACAGCAAGCAAGAAAATAGCAGATGCCAAACTTGCAAAAGACTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCTCAGCGGCTTGCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCTTCCCTCTAGCTATACAGCCAGCGAGTTGGATGTTAGTTCTGATAAGAATCTGGAACAGCGTGCCCTTCTTGTTGAATCCAGAAGGCAGGAGGTCTTGATGTTGGATAATGAAATTGCTTTTAATGAGGCTATCATCGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAACAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGACATTGGCTCCAACATCGAGAACTCACATGCAGCAACTGCACAAGGAAAATCTCAGCTGGTGAAAGCTGCAAAAACCCAAAGATCAAATTCGTCTCTgACATGCTTGCTGTTGGTGATATTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 858 0.451 MSFQDIEAGRPFASRRDLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASELDHHVEVNVSLDLNHCFIFTASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASELDVSSDKNLEQRALLVESRRQEVLMLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4170 285 Coils Coil 284 285 - -
Sto6g4170 285 PANTHER SYNTAXIN 2 284 IPR045242 -
Sto6g4170 285 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 192 254 IPR000727 -
Sto6g4170 285 CDD SNARE_Qa 212 253 - -
Sto6g4170 285 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 284 - -
Sto6g4170 285 CDD SynN 23 169 IPR006011 GO:0016020
Sto6g4170 285 ProSitePatterns Syntaxin / epimorphin family signature. 198 237 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sto6g4170 285 Gene3D - 186 285 - -
Sto6g4170 285 SMART SynN_4 15 139 IPR006011 GO:0016020
Sto6g4170 285 SUPERFAMILY t-snare proteins 23 247 IPR010989 GO:0016020|GO:0016192
Sto6g4170 285 Pfam Syntaxin-like protein 30 141 IPR006011 GO:0016020
Sto6g4170 285 SMART tSNARE_6 187 254 IPR000727 -
Sto6g4170 285 Gene3D - 20 145 - -
Sto6g4170 285 Pfam SNARE domain 228 280 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4170 Sto-Chr6 44999373 45001992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4170 1 273 SNARE and Associated Proteins AT5G46860 76.557 8.50e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4170 - K08488 gmx:547656 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4170 6 44999373 45001992 Sto6g4170 6 44999373 45001992 ECH