Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4163 ATGTATGGGGATTGCCAAGTGATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCGGAAGCCCTATTCTCTTCCTCCATCCAAAACTCCAACTTCAACTTCATCCCTACCATGCCTTTCCAACCtttcccaccaccaccaccttccatgaaagaagaagatgatcagGGGGGGATgtcgatgatgatgatgatgcgaGGTGGGAAGGAAGAGATAATGGAGAGTGGGTCAGGAAGCGAACAAGCGGAGGACAAGTCTGGGAATGAACTAGACACCCAAAACCCTCCCAACAAGAAGAAGCGTTACCACAGGCACACCGCTCGTCAGATCCAAGAAATGGAAGCTCTGTTTAAGGAATGTCCACACCCAGACGACAAGCAGAGGATGAAACTGAGCCAAGACCTGGGCCTCAAGCCTCGCCAGGTCAAGTTCTGGTTTCAAAATCGTAGAACCCAGATGAAGGCACAGCAGGATCGAGCGGATAATGTGATACTGAGGGCAGAAAATGAGAACCTAAAGAATGACAACTATCGTCTGCAGGCAGCGTTGCGTAACGTGATGTGTCCCAATTGTGGTGGTCCGGCCATGGTGGGTGCTGACCTGGCCTTGGATGACCACCAGCTTCGCCTTGAGAATGCTCGCCTTCGAGAAGAGCTAGAACGCGTGTGTTGTCTGACTTCAAGATACACGGGGCGTCCAATCCAAACAATGGCCTCACCTGCTCCTCTTATGGCTCCTTCATTGGACTTAGACATGAACATATACTCGAGGCATTTCGCAGATCCCATTGCTTCCGAGATGATTCCTGTGCCAATGCTGCCTCCTCCACCACAGACTTCACCACCATTTCCAGACACTGGTCTCCTATTGTTGGAGGAAGACAAGTCCCTCGCCTTGGACCTCGCTATGTCTTCCATCAATCAACTTATTAAGATGTGTCAAGCCACGGAGCCGCTTTGGATCAAAAACCCTACTCCTACTCCTGAGAATAATGAAATGGAAATGCTGAATTTTGAAGAGCATGCAAGGTTGTTTCAGTGGCCTCTCAACCGCCATTCCTCTGCTGACCTCAGGACAGAAGCTACCCGTCACACTGCTGTCGTTATAATGAATAGCGTTACTCTTGTTGACGCCTTCCTTGATGCTGTTAAGTGGATGGAATTGTTCCCCACCATTGTTTGTAGAGCAAAAACTGTTCAACTTATATCGTCTGCTGCTTCTGGTCATGCAAGTGGATCTCTTCAACTGATGTACGCAGAATTGCAAATGATCTCTCCCTTGGTGTCGACTCGGGAGACTCATTTTCTTCGTTATTGCCAACAAAACGCTGAGGAGGGAAGCTGGGCCATTGTTGATTTCCCTCTTGATACCTTGCAAGAAAATTTTCACCATTCCTATCCCAGATACTGCAGGCGACCCTCTGGCTGCCTTATTCAAGACATGCCAAATGGCTACTCCAGGGTAACGTGGGTTGAGCAGGCGGAAGTAGAAGAGAAGCCAGTGCATCAGATATTGAGTAATTATGTGTACAGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTCTGCAGAGACAATGTGAGAGGGTGGCCAGTCTCATGGCAAGGAACATTTCAGACCTTGGAGTGATACCATCAGCAGAAGCTCGGAAGAACTTGATGAAACTGGCTCAAAGAATGATGAGAACGTTTAGCCTGAACATGAGCACCTCCAGTGGTCAATCATGGACCGCATTATCAGATTCCCCTGAAGACACAGTTAGAATCACAACCAGGAAAATCACAAACCCAGGCCAACCTAATGGGGTCATACTCAGCGCCGTCTCCACCACTTGGCTTCCCTATTCTCACACCAAGGTCTTTGACCTCCTCAAGGACGAGCGTCGCAGatctcagCTGGATTTTCTGTCGAATGGGAATTCTCTACATGAAGTGGCCCATATTGCAAATGGGTCGCATCCAGGAAATTGCATCTCCCTTTTGCGCATAAATAACGTAGAGCTAGTGGTACAAGAAAGCTGCACGGACGAGTCAGGGAGTATGGTAGTGTATGCCACCATAGATGTGGACTCCATCCAGCTAGCCATGTCCGGCGAGGACCCATCCTGCATAGCCCTTCTCCCCCAAGGCTTCGTAATACTTCCATCCACCACCACCCATCCCAATTCACCCTCCCAACCATCTCCACTAGGTTGCCTTCTCACTGTGGGGCTGCAGGTTCTGGCCAGCACTATCCCTTCCGCCAAGCTCAATCTCTCCAGCGTCACCGCCATCAACAACCATCTCTGCAATACTCTCCACCAAATTCAAGCTGCTCTTTCCTCCCACAATAATCCCACTTTTGTTGCCTCCACTGCTGCTCTACCCCCCTAA 2376 0.4811 MYGDCQVMSSMGGNVVVNSEALFSSSIQNSNFNFIPTMPFQPFPPPPPSMKEEDDQGGMSMMMMMRGGKEEIMESGSGSEQAEDKSGNELDTQNPPNKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNDNYRLQAALRNVMCPNCGGPAMVGADLALDDHQLRLENARLREELERVCCLTSRYTGRPIQTMASPAPLMAPSLDLDMNIYSRHFADPIASEMIPVPMLPPPPQTSPPFPDTGLLLLEEDKSLALDLAMSSINQLIKMCQATEPLWIKNPTPTPENNEMEMLNFEEHARLFQWPLNRHSSADLRTEATRHTAVVIMNSVTLVDAFLDAVKWMELFPTIVCRAKTVQLISSAASGHASGSLQLMYAELQMISPLVSTRETHFLRYCQQNAEEGSWAIVDFPLDTLQENFHHSYPRYCRRPSGCLIQDMPNGYSRVTWVEQAEVEEKPVHQILSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSAEARKNLMKLAQRMMRTFSLNMSTSSGQSWTALSDSPEDTVRITTRKITNPGQPNGVILSAVSTTWLPYSHTKVFDLLKDERRRSQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINNVELVVQESCTDESGSMVVYATIDVDSIQLAMSGEDPSCIALLPQGFVILPSTTTHPNSPSQPSPLGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIQAALSSHNNPTFVASTAALPP 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4163 791 CDD homeodomain 99 157 IPR001356 GO:0003677
Sto6g4163 791 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Sto6g4163 791 Gene3D - 84 167 - -
Sto6g4163 791 MobiDBLite consensus disorder prediction 71 106 - -
Sto6g4163 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 781 IPR042160 -
Sto6g4163 791 Gene3D - 350 520 IPR023393 -
Sto6g4163 791 CDD START_ArGLABRA2_like 295 529 - -
Sto6g4163 791 PANTHER - 84 781 - -
Sto6g4163 791 Coils Coil 155 175 - -
Sto6g4163 791 SUPERFAMILY Bet v1-like 292 532 - -
Sto6g4163 791 SMART START_1 300 530 IPR002913 GO:0008289
Sto6g4163 791 MobiDBLite consensus disorder prediction 79 93 - -
Sto6g4163 791 SUPERFAMILY Homeodomain-like 86 157 IPR009057 -
Sto6g4163 791 Pfam Homeodomain 99 154 IPR001356 GO:0003677
Sto6g4163 791 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Sto6g4163 791 ProSiteProfiles START domain profile. 291 533 IPR002913 GO:0008289
Sto6g4163 791 Pfam START domain 303 530 IPR002913 GO:0008289
Sto6g4163 791 SMART HOX_1 97 160 IPR001356 GO:0003677
Sto6g4163 791 SUPERFAMILY Bet v1-like 550 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4163 Sto-Chr6 44973854 44977549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4163 8 785 Homeobox Transcription Factor Family AT5G46880 56.168 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto6g4163 START 1.8e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4163 - - gmx:100812829 1156.35