Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4160 TTGGATCTCTCTTCTGACCTGGTTTCAGACTTCTACTCTTCGTTTTGCGAGAATGTGGCGACTCTGGCTGTCATTGGACGCTCGATTTTAATCTGTAATCTCGAGGATCGTGATCTAGGCGAAACTTTGTTTGCGGAAAAACTCCTAGTCGGCGAAATTGTAGTCATCCAGTcgGTGGAAAGAAGACTTTCTTTATCTAAGGAAGTTAGAAATGGGCTAGAATTTTTGAAGCGCAAACGGCTTCAACGTGCAAAACACATTACTGCCACTGAGAGCAGTGTTGCTAACACGATGACTAGAAGTGGAGATGCTTCAAGATCTTCAGCATCATGTGGTGTCCGATTGCATGGTAATTTAGATGTCTTTTCCAAACGGAAGGTGGATAAGTTTGGCATGAGTGATCTTGAATGGACTGAGAAAATTCCAGAGTGTCCTGTGTATTATCCAACAAAGGAAGAATTTGAGGATCCTCTGGTATATTTACAAAGGATAGCACCAGAAGCTTCAAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTGATGAAGGAGAAAGTAGGATTCAAGTTTACAACTAGGGTACAGCCACTTCGACTTGCTGAGTGGGACACTGAAGACAAGGTCACGTTTTTCATGAGTGGAAGAAATTATACATTCCGCGATTTTGAGAAAATGGCGAACAAAGTTTTTGCACATAGATATTCTAGTGCTGGATGTCTTCCTGCTTCGTTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGAAAGATGGAATCTGTTGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCATCTTCTCCCACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCACGGTTGTCCAAGTCCATTTTGCGCCTTTTGGAAACAGCAATTCCGGGAGTCACAGAACCGATGCTATACATTGGAATGCTGTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGTATAAATTATCATCACTGTGGGGCATCAAAAACATGGTACGGCATTCCAGGTCATGCAGCATTGGATTTTGAAAGTGTTGTGAGAGAGCATGTGTACACTAATGACATTCTTTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTCTCTTTCCTCCAAATATTTTGTTGGAACATGATGTACCTGTCTATAAGGCTGTTCAAAATCCGGGAGAGTTTGTAGTTACATTTCCTAGAGCCTATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTCGCGATTGGTGATTGGTTTCCTTTAGGTGCTATTGCTAGCCGGCGATATGCACTTCTTAACAGGGTGCCTCTGCTGCCTCACGAAGAACTCTTATGCAAAGAAGCAGTGCTTCTTCATACAAACTTAGAACTTGAGGATTCTGACTTTTCCTCTGCAGACCTGTCTGCTCATAATTGCATAAagatttcttttgtgaatttaatGCACTTTCAGCATTGTGCTCGTTGGTTCCTCATGAAATCAAGGGCTTGCACAAGTGTTTTTTCCCATTCCCATGGCACGATTCTGTGTAGCCTCTGCAAACGTGATTGCTTTGTTGCTTATGTTGACTGTGAGTGTCACATGCACCCAGTCTGCCTTCGCCATGATATTGAAGCTCTTGGCTTCACCTGTGGTAGTAAACACTCTCTTTATTTGAGGGAAGATATTGCTGATATGGAAGCTGTAGCTAAGAGGTTTGAGCAGGAAGATGGAATCGTGGATGAGATTCTTGAGCAAACCAAGGGTGACAATAACATGTATTCGTATCCTTTGTCACATATGTTCGAGAAAGCTGAAGCAAATGGATATACGCCTTACTGTGAGATAGAATTTGATTCTGTCATCGAACATTATTCAACCCCTGATCAAGAAACGAATATTCAAGACGGCAATTTACAAAGTCAACTTTTGAGACATTGCCCAGATGCTAAACCTGAGGTCTGCgaggtttctttttcttctgcTGCATCCACACTGTGTTCTCTTTCAGAACCTATTGAGAGCTGTTCTGCTTCCAAAAATGATGACGGGCTTGCTAACTTCACTCTAGGCTTTATTGGTTCTGAAGAATGTTGTGAAAGAGTATCTAATAGTGCATGCGAATCTTCACTATCCTCAGCACGCTATCATGAAACTTCAAGTAAACCTCAGGATGATCTTCATGGATTAGGGATGAAGGTCATTGTGGACAAAGAGAGTGACGATTCTGATTCAGAAATATTTAGGGTAAAGAGGCCTTCTTGTCTGAAGGCCGAGAAGAGAAATTTGAATGCTACCATTTCTTCCAAGCATTCTGACCAACAGGGACTGAAACGTTTGAAGAAAGTTGTTAATGATGGAAGTAGTGGGCAAGCAATGGAGTGCAGCAGAAGCAGTGATTCAAGTAACAAACATAGTCAGCCTGTTAAACGGAAAGTTGATGGTGAAAGTTGTTTGAAGGAGAAATATCAAAGGGGGAATAGCATTCCGATTTCTATAAGGTTTAAGAAGTTGGGCAATGAGGAATTAAGTAGACAACGAGATCACCACAGGAAAGATAGGTTTCAGCAGACAATTAGGGAACGACCTCCCTTAGAGATGGGGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTCTGAGCTTAGAGAGCAGATTGACTTGA 2736 0.413 LDLSSDLVSDFYSSFCENVATLAVIGRSILICNLEDRDLGETLFAEKLLVGEIVVIQSVERRLSLSKEVRNGLEFLKRKRLQRAKHITATESSVANTMTRSGDASRSSASCGVRLHGNLDVFSKRKVDKFGMSDLEWTEKIPECPVYYPTKEEFEDPLVYLQRIAPEASKYGICKIISPLSASVPAGVVLMKEKVGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFAHRYSSAGCLPASFLEKEFWHEIACGKMESVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLSKSILRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFESVVREHVYTNDILSSEGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQNPGEFVVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAVLLHTNLELEDSDFSSADLSAHNCIKISFVNLMHFQHCARWFLMKSRACTSVFSHSHGTILCSLCKRDCFVAYVDCECHMHPVCLRHDIEALGFTCGSKHSLYLREDIADMEAVAKRFEQEDGIVDEILEQTKGDNNMYSYPLSHMFEKAEANGYTPYCEIEFDSVIEHYSTPDQETNIQDGNLQSQLLRHCPDAKPEVCEVSFSSAASTLCSLSEPIESCSASKNDDGLANFTLGFIGSEECCERVSNSACESSLSSARYHETSSKPQDDLHGLGMKVIVDKESDDSDSEIFRVKRPSCLKAEKRNLNATISSKHSDQQGLKRLKKVVNDGSSGQAMECSRSSDSSNKHSQPVKRKVDGESCLKEKYQRGNSIPISIRFKKLGNEELSRQRDHHRKDRFQQTIRERPPLEMGPKRLKVRGPSFLSLESRLT 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4160 911 PANTHER LYSINE-SPECIFIC DEMETHYLASE 113 907 - -
Sto6g4160 911 Pfam JmjC domain, hydroxylase 321 444 IPR003347 -
Sto6g4160 911 Pfam C5HC2 zinc finger 541 592 IPR004198 -
Sto6g4160 911 Pfam jmjN domain 145 177 IPR003349 -
Sto6g4160 911 SMART JmjN_1 143 184 IPR003349 -
Sto6g4160 911 MobiDBLite consensus disorder prediction 813 827 - -
Sto6g4160 911 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 113 907 - -
Sto6g4160 911 MobiDBLite consensus disorder prediction 809 841 - -
Sto6g4160 911 SMART cupin_9 288 461 IPR003347 -
Sto6g4160 911 Gene3D Cupin 137 466 - -
Sto6g4160 911 SUPERFAMILY Clavaminate synthase-like 222 477 - -
Sto6g4160 911 MobiDBLite consensus disorder prediction 864 893 - -
Sto6g4160 911 ProSiteProfiles JmjN domain profile. 144 185 IPR003349 -
Sto6g4160 911 MobiDBLite consensus disorder prediction 864 911 - -
Sto6g4160 911 ProSiteProfiles JmjC domain profile. 288 461 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4160 Sto-Chr6 44952113 44958475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4160 141 479 JUMONJI Transcription Factor Family AT2G34880 37.688 7.56e-64 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto6g4160 JmjC 1.1e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4160 - - gmx:100798611 1316.21