Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4147 ATGGCTGCGGATGAGCCCAATCCAGTTTTAGCCACTTCAGGCTTACAATTTCCTCCATCGACCTCCTCGGTATTGAAGGTTATGGAGCCAAAagatggaagGTTGCCCGGGTTGACACAGAAACTAAGCACTGAAGAGATCCCTAATCGCGGATTCAAGCCTGTAAGAGACACTAGAGAGAAACAGATACAACTATGGAAAGATCTTATTATAGATTACTGCAAAACACAGAAGATATTTGTGATCGGGCTTGAAGAAGAATTCCCTTTATTTTCTAATCCTGTGATTGAAAGGTCTCTCAGTCATGAAGCCAGAGAAGCCTTCCTTTCAGCCTTAGTTTCGGAAGGACGTGCTGAATGGATGGATAAAGGACATAAGAAATGTCTTATTCTCTGGCACCGCATTCAGGATTGGGCTGACATTATAGTACAATTTGCAAAAGATAATGGATTGGAAGATGGTGTTGTGACACTAGAGGAAATACGCTCAGGGACTGAATCTCAAGGAACAGAGCTTCAAGGGATAGACCGAATCATCTTGAATCGTGCTTTGAAACTATTAGAACAGAAGGGAAAGCTTGCGATCTTCAAGGGAACTTCAACTGATGATGAAGTATACAGAGCTTTTGGCAAGATTTGGATGGGTTTTGGCGCGCGTTTCCCATGTTCTTCATCCCTTGCACTTAGCTATTTTGGGTTTGGTTTTGTaatctttcctttcttcttcttcactgcttGTTCTATTTATTTGAGGGAGGGGGCATCTAACTCTGCATCTAATAAAAATTCAGATATGGATTGGAAACCAAAATTGGGGATGGAATTTGACAGCTTAGAGAAGGCTTGGACATTTTGGAATGACTATGGTGGAAAAATGGGGTTTGGAGTGAGAAAGGCATACACAAATAAAAGCAAGAAAGATGGCTCTGTCACATCTGTTAGATTTCTTTGTAGCAAGGAAGGGCTGAGAAGAGTAGACAAAAGAGATCATCTAACTAAGAATCCTCGACAAGAAACAAGAACGGATTGCAAAGTTAGAATGGGGCTCACCAACGAGAATGGAATATTTAGAGTCTCTGATTTAATAGAGGACCACAATCACGTTCTTCAAACTCCAAAAACAGCTTATATGTTGCCATCCCAACGTAATATATCAGAAGTTCAAGCACATGAGATTGAGTTAGCTGAAGATTCTGGACTGCAACAAAGAGCGTCGTATGAACTATTCAGTAGACATGTAGGCGGAAGAGATCATCTTGGCTTTACTCGTTTGGATCAAAAGAATTATCTTCGAACCAGAAGACAAAAGAGTTTGAAGTATGGGGAAGCCGGTTGTTTACTAAGATATTTCCAGGAACAGACGTTAATAGATCCATCATTTTATCGTGCTTTTCAGATGGATAATGAAGAACAAATAACCAATATATTCTGGGCTGATGCTAGAATGCGCTTGGATTATGGCATTTGA 1467 0.396 MAADEPNPVLATSGLQFPPSTSSVLKVMEPKDGRLPGLTQKLSTEEIPNRGFKPVRDTREKQIQLWKDLIIDYCKTQKIFVIGLEEEFPLFSNPVIERSLSHEAREAFLSALVSEGRAEWMDKGHKKCLILWHRIQDWADIIVQFAKDNGLEDGVVTLEEIRSGTESQGTELQGIDRIILNRALKLLEQKGKLAIFKGTSTDDEVYRAFGKIWMGFGARFPCSSSLALSYFGFGFVIFPFFFFTACSIYLREGASNSASNKNSDMDWKPKLGMEFDSLEKAWTFWNDYGGKMGFGVRKAYTNKSKKDGSVTSVRFLCSKEGLRRVDKRDHLTKNPRQETRTDCKVRMGLTNENGIFRVSDLIEDHNHVLQTPKTAYMLPSQRNISEVQAHEIELAEDSGLQQRASYELFSRHVGGRDHLGFTRLDQKNYLRTRRQKSLKYGEAGCLLRYFQEQTLIDPSFYRAFQMDNEEQITNIFWADARMRLDYGI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4147 488 Pfam FAR1 DNA-binding domain 283 370 IPR004330 -
Sto6g4147 488 SUPERFAMILY "Winged helix" DNA-binding domain 134 200 IPR036390 -
Sto6g4147 488 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 25 52 204 - -
Sto6g4147 488 Pfam ESCRT-II complex subunit 54 176 IPR008570 GO:0000814|GO:0071985
Sto6g4147 488 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 52 204 IPR008570 GO:0000814|GO:0071985
Sto6g4147 488 Gene3D - 51 132 IPR014041 -
Sto6g4147 488 SUPERFAMILY "Winged helix" DNA-binding domain 54 138 IPR036390 -
Sto6g4147 488 Gene3D - 134 207 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4147 Sto-Chr6 44833868 44846717 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto6g4147 ESCRT-II 6.2e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4147 K12189 - bvg:104899229 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4147 6 44833868 44846717 Sto6g4147 6 44833868 44846717 ECH