Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4114 ATGGCTGTAAATCTCACGGAAGGAGCAATAACGATTATGTGCAGGGATGATTTCTCCTCAGAGGACCTGAAGCCGGTCCTCCAAGTAATCGACTTGAAGTTGGTGCAGTCACAGCAGCATAGCGCCACCGAGAGGTACAGGCTCGTGCTTTCAGATGGTACGTATTACCAGCAAGGGATGCTCGCTACTCAGAAGAACGAGTTGGTGAATTCTGGGAGGTTGCAGAAGGGTTCTGTTGTTAAGTTGACTCAGTTTATCTGTAATGTTGTTCAGAACCGCAAGATTATTATCATCATTGAGCTAGATATGGTACTTGACAAATGTGATCTAATTGGAGAACCTAAACAAGCTCCTAAACCTGAATCTGCAACATCTTCCACTGGTCAGCCTGGAGCTACCACAGCGACTCCACAGTCTTTAAGTAGAAGTTCACCTGCCGGAGGAATGCCTGCTCAATCAAATGTGGCTGGGCCATCACTGGATCATCAAAAAATGACTCATACTTACAGTAATGCTTATTCTACTGGTTCTGACTCTGCAAGAGAACCTAGAGCCACTTTACCTAGATCAGAGCCACTCGGTGTGTCCTATGGTGAACGGAACATGGGCTACCGAAACCCCCAACCAGAAGCTTCAAATTCGTATGCTCGTGCACCCCAGCCTCTGCCAAATTCTTATGCTCGTCCACCCCAGCCTATGTATAGACAGCCATCCCCAGTTTACAGCAACAGAGGACCAATAGCCAGAAATGAAGCTCTTCCAAGGATAATTCCAATAGCTGCATTGAATCCATACCAAAATGTATGGACAATTAAGGCCAGAGTAACAGCAAAGGGAGACCTAAGGCACTACCATAATGCTCGAGGTGAAGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGTAACATGTTTTAATTCTGTTGCTGATCAGTTCTATCAACAAATTGAATTTGGTAAAGTCTACCTAATTTCTAGGGGAACTGTGAGGCCGGCTCAAAAGAATTTTAATCACCTCCCTAATGATCAAGAAGTGATGCTTGATGTTACATCAACTGTACAGCCATGTCTTGATGATGACAAGTCAATACCAATGCAGATGTTTAATTTTCGTCCTATTAATGAAGTTGAAAGTTTGGAAAGTTCAAGTATTGTGGATGTGATTGGTGTGGTATATTCTATTAGTCCTACAATGTCAATCATGAAAAAGAATGGAACTGAAACTCAGAAGAGAGCCCTCCTGATGAAGGACATGTCTGGCTGCAGTGTTGAATTAACCTTATGGGGAAATTTTTGTAATGCAGAAGGACAAAAGTTGCAGAGCATTTGCGATTCTGGGGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAGTTCAATGGGAAGTGTGTTGGGACAATTCTCACCAGTCAGCTATTTATAGAGCCTGATTTTCCTGAGGCTTACAGACTGAAAGAATGGTTTGACAAGGAAGGGAAGAGCACTCCAACTATTTCTATTTCCAGGGAATCATTCAGCATAAGTAAGACTGACATGAGGAAGACTTTATCTCAGATTAAAGATGAGAAATTAGGGACTTCAGAGAAGCCAGATTGGATTACTGTCTGTGCAAGTGTTTCATTCATTAGGTCTGATTCTTTCTGCTATACAGCTTGTCCAATCATGATAGGGGACAGGAAATGTAACAAAAAAGTGTCTAATAATGGAGATGGAAGATGGCGGTGTGATAGGTGTGATCAGTATGTTGATGCATGTGAATATAGGTATATCTTGCAACTTCAGTTACAGGACCACACTGGCCTAACCTGGGTAACTGCTTTCCAGGAGTGTGGTGAAGAGATCATGGGCGTACCTGCAAAAGATCTGcattatatgaaatatgaagAGCAAGATGACAAAAGATTTGCACAAGTCGTCCGTAAGGTTCTctttactaaatatatattcaagttAAAAGTGAAGGAGGAGACATTTGGTGATGAACAGCGTGTAAAGCCAATAGCAGTGAAAGCAGAGAAGGTCGACTTTTCATCTGAATCTAGATTTCTTTTAGCTCTGATTGATAAGTTTAAAGCTGACAAGATAGGTGTCAATCCTAACACCGTAATGAATAATGCTGGACTGCGGAGTGTTGGAACTGGACTAGCTGTGCCACAAGTTTATACTCCTATGAAAAACAACACTAATGCTAGTAGAGAATATGGGACGCCGGCAAATCAAGTGGGTCAGCAGTATGGACACCAATCGCTCACTTCAGGTGGGTCTTCCAGTTCATTTATGTCTTGCAACAACTGTGGAGGCTCTGGTCATAGCTCTATGCTCTGCCCAAACATTGCAAGTGTACAGCGACAGTCTATGGGAGGAGCAGCGTCTGCAAATAGGGCAACTTCTGGAGAATGCTTTAAATGCCATCAAACTGGCCACTGGGCAAGAGACTGCCCTGGTATCAGTGCAGCAGCCCCCTCAGCTTATGGAAGCAGTAGTGTAATGCAAGGACATGGGGTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA 2559 0.4279 MAVNLTEGAITIMCRDDFSSEDLKPVLQVIDLKLVQSQQHSATERYRLVLSDGTYYQQGMLATQKNELVNSGRLQKGSVVKLTQFICNVVQNRKIIIIIELDMVLDKCDLIGEPKQAPKPESATSSTGQPGATTATPQSLSRSSPAGGMPAQSNVAGPSLDHQKMTHTYSNAYSTGSDSAREPRATLPRSEPLGVSYGERNMGYRNPQPEASNSYARAPQPLPNSYARPPQPMYRQPSPVYSNRGPIARNEALPRIIPIAALNPYQNVWTIKARVTAKGDLRHYHNARGEGKVFSFDLLDSDGGEIRVTCFNSVADQFYQQIEFGKVYLISRGTVRPAQKNFNHLPNDQEVMLDVTSTVQPCLDDDKSIPMQMFNFRPINEVESLESSSIVDVIGVVYSISPTMSIMKKNGTETQKRALLMKDMSGCSVELTLWGNFCNAEGQKLQSICDSGAFPVLAVKAARVNEFNGKCVGTILTSQLFIEPDFPEAYRLKEWFDKEGKSTPTISISRESFSISKTDMRKTLSQIKDEKLGTSEKPDWITVCASVSFIRSDSFCYTACPIMIGDRKCNKKVSNNGDGRWRCDRCDQYVDACEYRYILQLQLQDHTGLTWVTAFQECGEEIMGVPAKDLHYMKYEEQDDKRFAQVVRKVLFTKYIFKLKVKEETFGDEQRVKPIAVKAEKVDFSSESRFLLALIDKFKADKIGVNPNTVMNNAGLRSVGTGLAVPQVYTPMKNNTNASREYGTPANQVGQQYGHQSLTSGGSSSSFMSCNNCGGSGHSSMLCPNIASVQRQSMGGAASANRATSGECFKCHQTGHWARDCPGISAAAPSAYGSSSVMQGHGVVQRQQLGGF 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4114 852 SUPERFAMILY Nucleic acid-binding proteins 521 698 IPR012340 -
Sto6g4114 852 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Sto6g4114 852 PANTHER REPLICATION PROTEIN A SUBUNIT 3 733 - -
Sto6g4114 852 CDD RPA1_DBD_C 524 697 IPR013955 -
Sto6g4114 852 Pfam Replication protein A OB domain 379 482 IPR031657 -
Sto6g4114 852 Gene3D - 762 837 - -
Sto6g4114 852 Gene3D - 508 699 IPR012340 -
Sto6g4114 852 MobiDBLite consensus disorder prediction 115 240 - -
Sto6g4114 852 PANTHER REPLICATION FACTOR A 1, RFA1 3 733 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g4114 852 Pfam Zinc knuckle 807 822 IPR001878 GO:0003676|GO:0008270
Sto6g4114 852 SMART c2hcfinal6 769 785 IPR001878 GO:0003676|GO:0008270
Sto6g4114 852 SMART c2hcfinal6 807 823 IPR001878 GO:0003676|GO:0008270
Sto6g4114 852 MobiDBLite consensus disorder prediction 119 181 - -
Sto6g4114 852 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 232 697 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto6g4114 852 MobiDBLite consensus disorder prediction 206 220 - -
Sto6g4114 852 SUPERFAMILY Retrovirus zinc finger-like domains 792 825 IPR036875 GO:0003676|GO:0008270
Sto6g4114 852 SUPERFAMILY Nucleic acid-binding proteins 256 369 IPR012340 -
Sto6g4114 852 CDD RPA1_DBD_B 390 497 - -
Sto6g4114 852 ProSiteProfiles Zinc finger CCHC-type profile. 808 822 IPR001878 GO:0003676|GO:0008270
Sto6g4114 852 CDD RPA1_DBD_A 258 361 - -
Sto6g4114 852 Gene3D - 368 507 IPR012340 -
Sto6g4114 852 Pfam Replication factor-A C terminal domain 540 691 IPR013955 -
Sto6g4114 852 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sto6g4114 852 SUPERFAMILY Nucleic acid-binding proteins 374 502 IPR012340 -
Sto6g4114 852 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sto6g4114 852 Pfam OB-fold nucleic acid binding domain 269 341 IPR004365 GO:0003676
Sto6g4114 852 Gene3D - 3 117 IPR012340 -
Sto6g4114 852 Gene3D - 255 365 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4114 Sto-Chr6 44622076 44625502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4114 1 796 Core DNA Replication Machinery Family AT5G45400 51.472 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4114 K07466 - gmx:100778597 1087.4