Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4108 ATGGAGTTCTGCGAGCGTGAGATCATGTCAGTTCGAGAAGTCTGTGCAAATGGGAGCTGCATGCAAACAACAGAAGTTGAGGCAAAGCTTGACGAAGGAAATATTCAAGAGGCAGAGTCTTCATTGCGCGAAGGGTTATCACTCAATTTTGAGGAAGCAAGAGCTCTTCTAGGGAAGTTGGAGTATCAGAGAGGTAACGTGGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCTATACAGCGATTGCAACCTTTCATTTCTGAAAAACCATCAATCAAGAAAGGTTTGGTGCTTGAAGCCATCTATTTAAAAGCCAGATCTCTACAAACTCTGGGGAGATTAACTGAAGCTGCAAATGAATGCAAAAGTGTGCTTGATGCTGTTGAGAAGATATTTTATCAGGGCATACCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCACGCTGTAGAGCTTCTTCCAGAGCTTTGGACACAGGCTGGTTGCTATCATGAGGCAATATCAGCTTATAGGCGTGCCCTTATTAGCCAATGGAACCTTGATGGTGATTGCTGTGCAAGAATCCAGAAaagttttgttatatttttgctaTACAGTGGGGTGGAGGCTAGCCCACCCAGTTTAGCAGTTCAGATTGATGGGTCTTatgtacctaaaaataatttagaagAGGCAATTCTGCTTCTAATAATTCTTTTAAGAAAGTTTTGCCTTGGTAAGACCAAATGGGACCCTTCAGTAATGGAGCACCTGACATTTGCACTTTCTGTATGTGGCCAAACATCTGTTTTGGCAAAGCAACTTGAAGAGTTAATTCCAGGAGTGTATAATCGCATCGACCGACGGAATTATTTAGCTTTATGTCATGGTGGAGCTGGACTAAACAATAGTGCTTTGAATCTGTTAAGAAAATCTTTGCACAAACATGAAAGACCAGACGACCTGATGACATTGCTATTGGCTGCCAGGATCTGCAGCGATGATTCTCAACTTGCTGCCGAGGGAGTGGGGTATGCACAGCGGGCAATTGCAAATGCTCAGGGCCCAAATGAGCATCTTAAAGGTGTGGGTCTTCGTATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGATCTCATTTGCAGTCCAAAGCTTTGAAATCATTGGAGGAGGCAGCGAGATTGGAGCAAAAAAATTCTGATCTGCTTTTTGAGTTGGCTGTTCAATATGCAGAGGACCGGAATTTGACAGCTGCCTTGCACTATGCGAAGAAGTTTTTTGATGAAACAGGTGGCTCTATATTGAAAGGTTGGGCAATGCTTGCTCTGGTTTTGTCTGCTCAACAAAGATTTTCAGAGGCTGAGGTTGTAACAGATGCTGCTTTAGATGAGACTACAAAATGGGAGCAGGGTCCACTGCTTAGGCTGAAAGCAAAGCTGAAGATCTCCCAGTCACAGCCCATGGATGCTATTGAAACTTATCGGTACCTCCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGTCATCTCATTACTAGTTCACAGGTTGACGATGGTAAAGTAAATGAATTTGAGATTTGGCATGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATATGTTTGCAAAAGGCCAAGGAGTCAAAGCGGTACTCTGCAGCATCAATGCACACTGAAGGCAAGAACAGAGCCTGTGTGATATTTGAAGGACGTGAGGAAGATCAGGCTGCTCTGGGTGCTTTGTTTAACGCCTTCATACTTGATCCAAGCTATGTTCCAAGCAAGATCTTAGCAGGTGCTCTGATGCTGAAACTGGGTTCGAAGGGTTTGCCTGTGGCTAGAAGCTTACTTTCTGATGCTCTTAGGATAGACCCCACTAACCGCAAGGCTTGGTATTACCTGGGAATGGTTCACAAAGATGATGGCCGACTGGGTGATGCTGCTGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAATCAGATCCAGTTGAAAGTTTCAGCACTGTTCTTTGA 2052 0.4362 MEFCEREIMSVREVCANGSCMQTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPFISEKPSIKKGLVLEAIYLKARSLQTLGRLTEAANECKSVLDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWTQAGCYHEAISAYRRALISQWNLDGDCCARIQKSFVIFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLIILLRKFCLGKTKWDPSVMEHLTFALSVCGQTSVLAKQLEELIPGVYNRIDRRNYLALCHGGAGLNNSALNLLRKSLHKHERPDDLMTLLLAARICSDDSQLAAEGVGYAQRAIANAQGPNEHLKGVGLRMLGLCLGKQAKVASSDFERSHLQSKALKSLEEAARLEQKNSDLLFELAVQYAEDRNLTAALHYAKKFFDETGGSILKGWAMLALVLSAQQRFSEAEVVTDAALDETTKWEQGPLLRLKAKLKISQSQPMDAIETYRYLLALVQAQRKSFGHLITSSQVDDGKVNEFEIWHGLANLYASLSHWKDAEICLQKAKESKRYSAASMHTEGKNRACVIFEGREEDQAALGALFNAFILDPSYVPSKILAGALMLKLGSKGLPVARSLLSDALRIDPTNRKAWYYLGMVHKDDGRLGDAADCFQAASMLEESDPVESFSTVL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4108 683 SUPERFAMILY TPR-like 30 183 IPR011990 GO:0005515
Sto6g4108 683 Gene3D Tetratricopeptide repeat domain 441 574 IPR011990 GO:0005515
Sto6g4108 683 Gene3D Tetratricopeptide repeat domain 271 440 IPR011990 GO:0005515
Sto6g4108 683 SUPERFAMILY TPR-like 529 674 IPR011990 GO:0005515
Sto6g4108 683 PANTHER PROTEIN NPG1 1 682 IPR043376 -
Sto6g4108 683 Gene3D Tetratricopeptide repeat domain 575 678 IPR011990 GO:0005515
Sto6g4108 683 PANTHER CALMODULIN-BINDING PROTEIN 1 682 - -
Sto6g4108 683 Gene3D Tetratricopeptide repeat domain 24 184 IPR011990 GO:0005515
Sto6g4108 683 SMART tpr_5 641 674 IPR019734 GO:0005515
Sto6g4108 683 SMART tpr_5 286 319 IPR019734 GO:0005515
Sto6g4108 683 SMART tpr_5 532 565 IPR019734 GO:0005515
Sto6g4108 683 SMART tpr_5 102 135 IPR019734 GO:0005515
Sto6g4108 683 SMART tpr_5 442 475 IPR019734 GO:0005515
Sto6g4108 683 ProSiteProfiles TPR repeat profile. 641 674 IPR019734 GO:0005515
Sto6g4108 683 SUPERFAMILY TPR-like 102 428 IPR011990 GO:0005515
Sto6g4108 683 SUPERFAMILY TPR-like 390 494 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4108 Sto-Chr6 44600749 44604134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4108 11 683 Calmodulin-binding Proteins AT2G43040 73.266 0.0 993
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4108 K21843 - gmx:100814609 1026.16