Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4105 ATGAAGCATAACAATGTTATCCCTAGCTCGCACTTCCGCAAGCATTGGCAAAACTATGTCAAGACTTGGTTCAATCAACCGGCGCGGAAGACAAGAAGACGATTAGCTCGTCAAAAGAAAGCCGTTCAGATTTTCCCTAGGCCTACGGCTGGACCTCTTAGACCTGTTGTTCATGGTCAAACTTTGAAATACAACATGAAAGTCAGAGCTGGCAGAGGATTTTCCCTGGAAGAATTAAAGGCTGCTGGTATTCCCAAAAAACTCGCACCAACCATCGGCATTGCTGTCGATCATCGTCGCAGGAACTGTTCTCTGGAGGGTCTGCAAGCTAATGTCCAGAGACTGAAAACATACAAGGCCAAGTTGGTTGTGTTCCCAAGGCGTGTTCGCAAATTCAAGGCTGGTGATTCTACTGCTGAGGAACTTGGAAATGCCACTCAAGTGCAGGGCGAATACTTGCAGATTGCCAGGGAGAAGCCATCTGTGGAGCTTGTGAAGGTCACAGATGAGATGAAGGCATTCAAGGCTTATAACAAGCTTCGTCTTGAACGCACAAATCAACGCCATGTTGGAGTCAGGCTGAAGAGGGCAGCTGAAgcagagaaggaagagaagaagTGA 621 0.4589 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVQIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNCSLEGLQANVQRLKTYKAKLVVFPRRVRKFKAGDSTAEELGNATQVQGEYLQIAREKPSVELVKVTDEMKAFKAYNKLRLERTNQRHVGVRLKRAAEAEKEEKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4105 206 Pfam Ribosomal protein L13e 6 184 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sto6g4105 206 Hamap 50S ribosomal protein L13e [rpl13e]. 44 127 IPR001380 GO:0003735|GO:0005840|GO:0006412
Sto6g4105 206 ProSitePatterns Ribosomal protein L13e signature. 69 83 IPR018256 GO:0003735|GO:0005840|GO:0006412
Sto6g4105 206 Gene3D - 166 206 - -
Sto6g4105 206 PANTHER 60S RIBOSOMAL PROTEIN L13 2 206 - -
Sto6g4105 206 PANTHER 60S RIBOSOMAL PROTEIN L13 2 206 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4105 Sto-Chr6 44589288 44590366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4105 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 83.770 6.17e-123 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4105 K02873 - sind:105160239 360.533