Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4049 ATGTCTTCCTCTAATTATAACGCCGGTGACAATTCCAGCACATTTTGTTCGGTAGGTGATGATCACGATCACTACTCACCTCCCATTTCTTTAATGTTTACCGATCCCGCACCCCTCACTCCCCTCTTCCCCTCCTCACCCCTCCACCACCCCATTCTCCCATTTGACGCCCCCTTACTCTCTCCTTCTCCCTCTTCCCTCCCTATCTCAACCTCTTCCACCTCCCAATTTCTTCTCGATCCCCTTCCGGATCACATCGTCTCTGAACCTCCTCCGCCTGTCTTtacaccaccaccacctcctcctcctcctcctccgccgCCACCTCCTCCCATAGTAAATGAAGCGCCCGCCCCCACTACTGCTGAGACCGCCAAACGGAAGCGTGGGCGGCCCAAGAAGTATTTCACTATTGCTGCTCCGTCCAGTGCAGGGCAAGCGAAGGCGGCACCGGAGTCAACTCCTGGAGCCCAGACGGAAGAGATGGCGGCGGCATCGTCGAAGGGGAAGATTAAAGAGACTAAAAGAGATAAGCCGATCTCAACAACCTTGGGTCTAGGTTCCACAAGAAATGTCATTAGACCATTCACAATTCTTGTCTCAGAAGCGGAGGATGTTTCTGAGAAACTGATCTCTTTTGCTCAACACACCAAAGGAGCAATATTCGTTTCAGCAGCGAGTGGAGTGTTGGCCTCCATTCACCTTCTCGACTCCTCAACAACCAGTGCCAGAACACTCGTGggaAGATTCGACATACTCACAATGTCAGGAACCCTATTGTTGAGTAAGGATGGAATCAACAGTTCCGGACATTTAACAATGTCAGTCTGTGGAGTGGATGGAAGCGTACATGGAGGGCGCGTTCATGGACGCTTGATTGCAGCTTCTCCTATTCAGATAATAGGTGGAAGTGTTGCTCCAGCTGGTAAGAGGGGGTCAGAAGAGATGAGCAGTAGTGATGGGAGAAGGGAAGAGTGGGCACATAGACGCCAAGTAGAATCTCTGAATGAGCGTCTGGAAGCAACAATGGAAGAGCTGAAGCAGACACGACAAGAGCTCAAAGAAACCAAAAAGAAGTTGGATGTTGCTGCTGACACCATTGCCAGTACTCACAGAGCCGTCATGAATCTAATTGAAAATTCCAACGTCAAGCTCACACTACAACCTCCTCCGCCATCTTCCTAA 1185 0.4852 MSSSNYNAGDNSSTFCSVGDDHDHYSPPISLMFTDPAPLTPLFPSSPLHHPILPFDAPLLSPSPSSLPISTSSTSQFLLDPLPDHIVSEPPPPVFTPPPPPPPPPPPPPPPIVNEAPAPTTAETAKRKRGRPKKYFTIAAPSSAGQAKAAPESTPGAQTEEMAAASSKGKIKETKRDKPISTTLGLGSTRNVIRPFTILVSEAEDVSEKLISFAQHTKGAIFVSAASGVLASIHLLDSSTTSARTLVGRFDILTMSGTLLLSKDGINSSGHLTMSVCGVDGSVHGGRVHGRLIAASPIQIIGGSVAPAGKRGSEEMSSSDGRREEWAHRRQVESLNERLEATMEELKQTRQELKETKKKLDVAADTIASTHRAVMNLIENSNVKLTLQPPPPSS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4049 394 CDD DUF296 194 301 IPR005175 -
Sto6g4049 394 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 121 350 IPR039605 GO:0003680
Sto6g4049 394 MobiDBLite consensus disorder prediction 53 183 - -
Sto6g4049 394 MobiDBLite consensus disorder prediction 63 79 - -
Sto6g4049 394 Coils Coil 329 366 - -
Sto6g4049 394 MobiDBLite consensus disorder prediction 1 19 - -
Sto6g4049 394 ProSiteProfiles PPC domain profile profile. 190 328 IPR005175 -
Sto6g4049 394 SUPERFAMILY AF0104/ALDC/Ptd012-like 192 303 - -
Sto6g4049 394 Pfam Plants and Prokaryotes Conserved (PCC) domain 194 304 IPR005175 -
Sto6g4049 394 MobiDBLite consensus disorder prediction 304 328 - -
Sto6g4049 394 MobiDBLite consensus disorder prediction 1 21 - -
Sto6g4049 394 Gene3D - 194 319 - -
Sto6g4049 394 MobiDBLite consensus disorder prediction 85 116 - -
Sto6g4049 394 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 121 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4049 Sto-Chr6 44157204 44158846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4049 120 311 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 36.318 2.21e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4049 - - mus:103986862 115.161