Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4042 ATGACGCGAACACTCAGATTTCTCAATTCCGTCGACCATAGCACGGTGGCGGCGGCGCCACCCCCGGAGGCCGTGGCTATGGAGTCGGACTTCGTGGTGATTCTCGCGGCTCTGCTCTGCGCCCTCATATGCGTGGTGGGGCTCATAGCCGTCGCTCGCTGCGCCTGGCTCCGGCGAGGCACCGGCGCCGGCGGGTCTCCGACGCAGGCTCTGGCGAATAAGGGCCTGAAGAAGAAGGTGCTCCAGTCGCTGCCTAAGTTCACCTACGTTAACGGGAATCCGCATAAGTGGGTGGCTACGTCGGAGTGCGCGATCTGCTTGGCGGAGTTCGCCGACGGCGACGAGATCCGGGTGCTGCCACAGTGCGGGCACGGGTTCCACGTGGCGTGCATCGACACGTGGCTTGGGTCCCACTCTTCGTGCCCTTCTTGTCGGCAGATTCTCGCGGTGGCTCGGTGCCAGAAGTGCGGGCAGTATCCGGCGGTTGGGGGCGGCGGAGGATCGGCCGGAGCCTCCAGTGGCAGTGTCCCTGAACCGGAGTTGAAGTCTAGAGAAGACGGCAATGCGGCCACCGGCGCtactaattataatattagCAACCCCCACAACCACCACACGGTGGACAGTAATTACTTGCCTTAA 642 0.6231 MTRTLRFLNSVDHSTVAAAPPPEAVAMESDFVVILAALLCALICVVGLIAVARCAWLRRGTGAGGSPTQALANKGLKKKVLQSLPKFTYVNGNPHKWVATSECAICLAEFADGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVARCQKCGQYPAVGGGGGSAGASSGSVPEPELKSREDGNAATGATNYNISNPHNHHTVDSNYLP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4042 213 MobiDBLite consensus disorder prediction 167 213 - -
Sto6g4042 213 Pfam Ring finger domain 102 145 IPR001841 -
Sto6g4042 213 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 186 - -
Sto6g4042 213 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 186 - -
Sto6g4042 213 MobiDBLite consensus disorder prediction 188 213 - -
Sto6g4042 213 CDD RING-H2_PA-TM-RING 102 145 - -
Sto6g4042 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Sto6g4042 213 SMART ring_2 103 144 IPR001841 -
Sto6g4042 213 SMART FANCL_C_2 99 153 - -
Sto6g4042 213 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Sto6g4042 213 SUPERFAMILY RING/U-box 82 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4042 Sto-Chr6 44107693 44108334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4042 1 156 C3H Transcription Factor Family AT1G20823 64.458 1.08e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4042 - - gmx:100787383 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4042 6 44107693 44108334 Sto11g1375 11 13259032 13262550 CCT