Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4036 ATGACGAAAGTTTGGCTTCTGGTGTTAATGGTTCTCTCTTCAACTGCAGCTGCCTTGAATCATTCTACAAGACCTGATTCTGTAAATATTGGGTTTCTCTTCTCTTTCAAAACCTCCGTCACTAAATCTGTACAAGTTGCCCTAGAAGCTGCAGTTGATGATGTAAATTCTGATCCATCTATTCTTGCTAACACTAAGCTCAAAGCCATATTCCAAGAGGATTCCAAATACAGAGGTTTTCTGAGCATTGCCGAGGTCTTGCATCTCATGGCCAGACATCCTGTGGCTATAATTGGCCCTCAGTCTTCTATAACTGCCCATGTCATATCTCACATTGCAAACGAGCTCCAAGTTCCTCTGCTATCATTTTCTGCAACGGAACCCACACTCTCTTCCCTTGAATTCCCATTCTTTGTTAGGACATCCCATAGTGATCTCTATGAAATGACTGCAATAGCAGAACTTGTTAACTACTATGGGTGGAGAGAGGTGATTGCAGTCTATACTGATGATGATCAAGGCAGAAATGGAATTATTGCATTAGGGGATAAGCTAGCTGAGAGACGTTGTAAGATCTCTTACAAAGCACCTATGAGCCCTGAAGCATCTGAGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCTATGGCAGAATCTAGGATCATAGTTTTACACACTAATACTGCTTGGGGTCCCAAGGTGTTGAAAGTGGCCAAGTATCTTCGGATGATGGATTctgggtatgtttggattaccACTAATTTTCTCTCTACTATTCTGGACACAGATGGTCCCCTCCCTTTAGATACAATGGAAATGATTCAAGGAGTTCTTACACTGCGAGTCTACACGCCAGATTCAGAGCTGAAAAGAAGATTTTTTTCAAGGTGGAGAAACTTGACTGCTAATAGTGATGTTCACCTTGGATTGAATACTTATCCTCTCTATGCATATGATACTGTTTATTTGCTGGCTCATGCACTTGATAGTTTTTTCAAACAAGGGAACCAAATCACATTCTCGTATGATCCAAAGTTGTCTGAACTGCGTGGGAACAGTTTAAATCTTGATTCTCTCAACATCTTTGATCAAGGACAACGGTTGAGAAGCTGTATCTACGATGTTAATATGAAAGGTGTAACTGGATCTAGGAGGGTTGGTTATTGGAGCAATTACACTGGATTATCAATTGATCCTCCTGAAGAACTGTATTCAAAGCCACCCAATCATTCCATTGCGAGTCAAAAGCTACGTAGTGTGATTTGGCCTGGGCATATGATCCAGAAGCCTCGTGGTTGGGTTTTTCCAAACACTGGGAGGCTCTTAAAGATTGGAGTACCAAAAAGAGTTAGTTACCGCGAATTTGTCTCACAAGTGCAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTACCGTATAAGTTTGTTGGATTTGGGGATGATCACAGCAATCCTAATTACAATGAGCTTGTTCGTTTTATCACAACAGGTGTGTTTGATGCTGCAATAGGTGACATTACAATTACAACAGACAGAACAAAGATGGTGGACTTTACTCAGCCATTTATTGGGTCTGGTCTAGTAGTAGTAGCACCAGTGAAGAGGTTGGAATCTAGTGCTTGGGCCTTTTTGAGGCCATTTACTCCAAGGATGTGGGGCGTTACAGCTATCTTTTTCCTAGCAGTTGGAGCTGTTGTTTGGATTTTGGAGCATAGGAGGAATGATGATTTCCGGGGACCTCCGAGAAAACAATTAGTTACAGTTTTGTGGTTCAGTCTTTCCACTATGTTCTTCGCCCACATTCTTATAATCAACTCAAGTTACACAGCAAGCCTGACCTCAATCCTCACAGTCCAACAGCTTTCTTCGCCCATCAAAGGCATTGAATCTTTAGTCAATAGTAAAGACCCTATTGGCTACCCGAAGGGTTCTTTTAGTAGAAACtatctaattgaagaagttggtATCGATGAATCAAGACTTGTACCTCTAAGGACACCACAAGAAGCTGCTAAGGCATTGAAAGACGGCCCCAAAAAGGGTGGTATTGTTGCTTACGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGATGCGAGTTCACTATAGTCGGTCAAGAATTCACCAGAGACGGTTGGGGATTTGCTTTTCCACGAGATTCGCCTTTGGCTATTGACTTGTCGACTGCCATACTGAAATTGGCAGAGAACGGAGATTTACAAAGAATCCATGACAAATGGCTTCTGAATATAGCGTGCCTAACACAGAATGCAGAATTCGCGGTGGACAGACTTCACCTGAAAAGCTTTTGGGGGCTATATATGCTGTGTGGCTTCGCTTGCTTGCTTGCCTTACTCATCTATCTTATACTAATGATGAAGCAGTACAAGGAGCACTACGTGGAAGACGAGGCTGTGTCTTCTACTACTACCAGTGGCCGAAGCTCACGATCTTCACGTTTTCGGACTTTCCTTTCATTCGCAGACGAAAAAGAATCGGAAATGAAGAGCCGATCCAAGAGAAGGCAAATGGAGAGGCTCTCTTACACGAGCACTAATGAAAGTATGAGCTTCAATAAGCGATATGCTCGATCAGCTTCAGTCTCAAACAGAAGCCTTGATTCTGTAAATGAAGAAGCCTAG 2688 0.4208 MTKVWLLVLMVLSSTAAALNHSTRPDSVNIGFLFSFKTSVTKSVQVALEAAVDDVNSDPSILANTKLKAIFQEDSKYRGFLSIAEVLHLMARHPVAIIGPQSSITAHVISHIANELQVPLLSFSATEPTLSSLEFPFFVRTSHSDLYEMTAIAELVNYYGWREVIAVYTDDDQGRNGIIALGDKLAERRCKISYKAPMSPEASEEEITDVLVQVAMAESRIIVLHTNTAWGPKVLKVAKYLRMMDSGYVWITTNFLSTILDTDGPLPLDTMEMIQGVLTLRVYTPDSELKRRFFSRWRNLTANSDVHLGLNTYPLYAYDTVYLLAHALDSFFKQGNQITFSYDPKLSELRGNSLNLDSLNIFDQGQRLRSCIYDVNMKGVTGSRRVGYWSNYTGLSIDPPEELYSKPPNHSIASQKLRSVIWPGHMIQKPRGWVFPNTGRLLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVGFGDDHSNPNYNELVRFITTGVFDAAIGDITITTDRTKMVDFTQPFIGSGLVVVAPVKRLESSAWAFLRPFTPRMWGVTAIFFLAVGAVVWILEHRRNDDFRGPPRKQLVTVLWFSLSTMFFAHILIINSSYTASLTSILTVQQLSSPIKGIESLVNSKDPIGYPKGSFSRNYLIEEVGIDESRLVPLRTPQEAAKALKDGPKKGGIVAYVDERAYIELFLSSRCEFTIVGQEFTRDGWGFAFPRDSPLAIDLSTAILKLAENGDLQRIHDKWLLNIACLTQNAEFAVDRLHLKSFWGLYMLCGFACLLALLIYLILMMKQYKEHYVEDEAVSSTTTSGRSSRSSRFRTFLSFADEKESEMKSRSKRRQMERLSYTSTNESMSFNKRYARSASVSNRSLDSVNEEA 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4036 895 Pfam Ligand-gated ion channel 764 796 IPR001320 GO:0015276|GO:0016020
Sto6g4036 895 SMART GluR_14 443 765 IPR001320 GO:0015276|GO:0016020
Sto6g4036 895 Gene3D - 144 309 - -
Sto6g4036 895 Gene3D - 437 553 - -
Sto6g4036 895 Gene3D - 692 728 - -
Sto6g4036 895 Gene3D - 554 652 - -
Sto6g4036 895 Gene3D - 46 383 - -
Sto6g4036 895 MobiDBLite consensus disorder prediction 845 867 - -
Sto6g4036 895 MobiDBLite consensus disorder prediction 845 862 - -
Sto6g4036 895 Pfam Bacterial extracellular solute-binding proteins, family 3 499 763 IPR001638 -
Sto6g4036 895 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 382 - -
Sto6g4036 895 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 381 882 - -
Sto6g4036 895 PANTHER GLUTAMATE RECEPTOR 10 382 - -
Sto6g4036 895 PANTHER GLUTAMATE RECEPTOR 381 882 - -
Sto6g4036 895 CDD GluR_Plant 442 763 - -
Sto6g4036 895 SUPERFAMILY Periplasmic binding protein-like I 23 434 IPR028082 -
Sto6g4036 895 Pfam Receptor family ligand binding region 44 383 IPR001828 -
Sto6g4036 895 SUPERFAMILY Periplasmic binding protein-like II 419 764 - -
Sto6g4036 895 Gene3D - 729 762 - -
Sto6g4036 895 PIRSF IGluLR_plant 1 384 IPR017103 -
Sto6g4036 895 PIRSF IGluLR_plant 366 890 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4036 Sto-Chr6 44075026 44078984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4036 5 863 Ion Channels AT3G51480 56.057 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4036 K05387 - gmx:100788917 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4036 6 44075026 44078984 Sto11g1403 11 13461299 13465848 CCT