Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4025 ATGCCTAAAACTAAAGCCGATACCAGAGCTGCTGATAGTcgCTTGAAGCGCAAGGGCGCTGGAGCCGGAAGGAAGCAGACAAAGAAAGCTGCGAAGGATCCAAACAAGCCTAAAAGGCCTCCGAGtgctttctttgtttttatGGCTGAGTTCAGGGAGCAGTATAAAAAGGATCATCCAAACAACAAATCTGTTGCTGTTGTCGGTAAGGCTGGCGGTGAAAAATGGAAATCGTTGTCTGATGCTGAAAAAGCTCCCTACATAGCTAaggcagagaagaagaaggaagagtaCGACAGGACTATTCAGACCTACAACAAGAGACTGGAGGGTAAAAATCCTTCAGAGGAAGAAGAGTCAGATAAGTCAAGGTCTGAagtgaatgatGATGAAGACGATGATGAGTAA 408 0.402 MPKTKADTRAADSRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMAEFREQYKKDHPNNKSVAVVGKAGGEKWKSLSDAEKAPYIAKAEKKKEEYDRTIQTYNKRLEGKNPSEEEESDKSRSEVNDDEDDDE 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4025 135 MobiDBLite consensus disorder prediction 104 135 - -
Sto6g4025 135 MobiDBLite consensus disorder prediction 1 42 - -
Sto6g4025 135 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 135 - -
Sto6g4025 135 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 135 IPR031061 -
Sto6g4025 135 Coils Coil 88 108 - -
Sto6g4025 135 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Sto6g4025 135 SMART hmgende2 36 107 IPR009071 -
Sto6g4025 135 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Sto6g4025 135 SUPERFAMILY HMG-box 24 108 IPR036910 -
Sto6g4025 135 MobiDBLite consensus disorder prediction 1 19 - -
Sto6g4025 135 CDD HMGB-UBF_HMG-box 37 103 - -
Sto6g4025 135 Gene3D High mobility group box domain 21 123 IPR036910 -
Sto6g4025 135 MobiDBLite consensus disorder prediction 104 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4025 Sto-Chr6 43993867 43995133 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto6g4025 HMG_box 9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4025 K25507 K22507 gmx:100499992 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4025 6 43993867 43995133 Sto6g4025 6 43993867 43995133 ECH
Sto6g4025 6 43993867 43995133 Sto11g1409 11 13507065 13508250 ECH