Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4010 ATGGGAGGTGACAGTGCTGTTGATGATGCGACTGCCGCCCAGTCGAAGGGCAGTGATGGAGTGAATATTAACATTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATTAGTCTCGATTCCACTGTCCAATTGTTCAAGGAGCTTGTCGCGCGGAATTGTGATATCCCCGCCGATCAGCAGCGGCTGATTTACAAGGGTCGGATCTTGAAGGACGATCAAGCCCTGCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTGCGTGGCTTTGCCCCCTCTGCATCAGCCAATGCAACTGGTGGGACCAATACCAGTGGTACAAATACTACAACAAATAATGCAAGAGGTGCTGCTAATGAAGGTGGAGGTTTAGGAGGGTCTGGTTTTGGAGATTCACTGTTTCCTGGACTAAATATCAATGGGCTTGGAGGAAGTGGCATCAATGGCTTGTTTGGAGCGGGTGGCCTTTCAGATCTTGAACAAATGCAGCAACCATTTATTTCCAATCCCAATATGGTGAGGGAAATGATGAACACGCCTGCTATACAGAATCTAATAAATAATCCTGAGATAATGCGGAGTCTTATAATGAGCAACCCCCAATTGCGAGAGCTCATGGATCGAAATCCTGAGCTAGCACACATACTAAATGATCCTGCCACCCTCCGCCAGACACTTGAAGCTACAAGAAACCCGGAGATCATGCGTGAAATGATGAGAAATACTGACAGAGCAATGAGCAATATTGAATCATCTCCTGAAGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAATACAGGAAATGATAACTCTAATCCGTTTGCAGCACTTTTGGGAACTCAAGGTGGGCAAGCCAGAGATCGATCAACTAATCCTTCAACTACTAGTGCTGAAACTACTGCTGGTTCTCCCTCACCTAATACTAACCCGCTTCCTAACCCTTGGAGCTCTACTGGAACTGGAGGTACCCAAAACAGCACTGCCAGGACAACTTCTGGTGGGGATGCAAGGCAGCAGGCACCCACTGGCTTAGGAGGACTTGGTCTCCCAGATTATCAAGGCATGTTGGGTGCTATGCCTGATCCTGCCGTATTGACCCAGTTAATGCAAAACCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGAGCAACGTGGTGTGCCAGACCTTAATTCTCATCttagagaagtgatgcaaaacccCGAGTTCCTTCGCTTGTTTTCTTCACCTGAGACAATGCAGCAACTCTTGTCATTTCAGCAAACTCTTCTTTCTCAGCTTGGTCGGTCACCATCAACACAGGATTCAGGTCAGACTGGTAGTGGCACTGGAGCAGTGAACAACTCTGGTTTAGAGATGTTGATGAACATGTTTGGTGGACTTGGGGCTGGTAGCCTAGCTGTTCCCAACAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTAACTCAGCTTCAAGAGATGGGGTTTTTTGATACGCAAGAGAACATTCGTGCTCTTATTGCCACTCAAGGGAATGTTCATGCAGCAGTCGAACGGCTTCTGGGAAACTCTGGTCAGTAA 1662 0.4669 MGGDSAVDDATAAQSKGSDGVNINIRCSNGSKFSVQISLDSTVQLFKELVARNCDIPADQQRLIYKGRILKDDQALQSYGLEADHTVHLVRGFAPSASANATGGTNTSGTNTTTNNARGAANEGGGLGGSGFGDSLFPGLNINGLGGSGINGLFGAGGLSDLEQMQQPFISNPNMVREMMNTPAIQNLINNPEIMRSLIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQARDRSTNPSTTSAETTAGSPSPNTNPLPNPWSSTGTGGTQNSTARTTSGGDARQQAPTGLGGLGLPDYQGMLGAMPDPAVLTQLMQNPAISQMMQSILSNPQAMNQILGVNPEQRGVPDLNSHLREVMQNPEFLRLFSSPETMQQLLSFQQTLLSQLGRSPSTQDSGQTGSGTGAVNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4010 553 MobiDBLite consensus disorder prediction 98 120 - -
Sto6g4010 553 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Sto6g4010 553 Gene3D - 493 553 - -
Sto6g4010 553 SUPERFAMILY UBA-like 507 549 IPR009060 GO:0005515
Sto6g4010 553 MobiDBLite consensus disorder prediction 458 479 - -
Sto6g4010 553 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 553 - -
Sto6g4010 553 Gene3D - 197 255 - -
Sto6g4010 553 SUPERFAMILY Ubiquitin-like 12 109 IPR029071 -
Sto6g4010 553 SMART CBM 147 189 IPR006636 -
Sto6g4010 553 SMART CBM 412 447 IPR006636 -
Sto6g4010 553 SMART CBM 366 408 IPR006636 -
Sto6g4010 553 SMART CBM 202 241 IPR006636 -
Sto6g4010 553 SMART ubq_7 21 92 IPR000626 GO:0005515
Sto6g4010 553 MobiDBLite consensus disorder prediction 277 355 - -
Sto6g4010 553 Pfam UBA/TS-N domain 511 547 IPR015940 -
Sto6g4010 553 Gene3D - 8 105 - -
Sto6g4010 553 SMART uba_6 511 549 IPR015940 -
Sto6g4010 553 CDD Ubl_Dsk2p_like 21 93 - -
Sto6g4010 553 CDD UBA_PLICs 511 549 - -
Sto6g4010 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 505 550 IPR015940 -
Sto6g4010 553 PANTHER UBIQUILIN 3 553 - -
Sto6g4010 553 MobiDBLite consensus disorder prediction 277 365 - -
Sto6g4010 553 MobiDBLite consensus disorder prediction 98 122 - -
Sto6g4010 553 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4010 Sto-Chr6 43930065 43935049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4010 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.16e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4010 K04523 - gmx:100776447 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4010 6 43930065 43935049 Sto11g1416 11 13543713 13551645 CCT
Sto6g4010 6 43930065 43935049 Sto6g4010 6 43930065 43935049 ECH