Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4007 ATGGTGATTTCTGATAAGAACAATCGTAACCTAATCAAACCCACAAATTTCCAAGaAATGGAGACCAAAAAATTGGGGAACAACAGAAGAGCGTTAAGCGTCATTAATCAGAATCTAGCGGAGGGACGAGCGAACCCTTGCATCGTTAACAAGAGGGGATTTCCAGAGAGGTTTGCTGCCCAGATTGCTCAAACTAAGGAAAATAAGAAGCCAGACACATCAATCATGAAATCGAGTGAATTTGGAGACGCTATATTCATTGATGATGAGCACAAGACAGCTTACGATCAGCCAGTGCCGATGTCATTAGAGCAAACAGAACCAGTGGATCAGATGGAGGAAGTTGAGATGGAAGATATAGTTGAAGAGCCTGTTAGGGATATTGATTCTGGAGATGCAGATAATCATCTAGCAGTAGCAGATTATGTTAAAGAACTTTATGACTACTACAGAAAAATGGAGAGTATCGGTTGTGTATCACCAAACTATATGGCAGAACAAGATGACCTTAATGAAAAGATGAGGGCTATACTGATTGACTGGCTTATCGAGGTgcacgataaatttgacctcATGCACGAGACTTTATTTCTTACCGTTAATCTAATAGATAGGTTTTTGGCGAAGCAGAGCATGCTAAGAAAGAAACTTCAGTTGGTTGGTTTGGTTGCCATGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTACCTATAGTAGGGGATCTGATCCTTATATCAGACAAAGCATACACAAGGAAGCAAGTTCTGGAAATGGAGAAGTTGATGCTCAATACATTGCAGTTTAACATGTCGGTGCCAACAGCATATGTTTTTATGAAAAGGTTCCTAAAGGCAGCTGAGGCAGACAAGAAACTTGAGCTACTAGCTTTCTTCTTGATAGAGCTCTCTCTTGTGGAATATGAGATGCTGAAGTTCCCGCCATCGATGCTAGCTGCAGCTGCAGTCTATGCAGCTCAATGTACTGCTTACGGCTTCAAACAGTGGAGTAAGACATGTGAATGGCATACAAACTACTCAGAAGATCAGCTATTAGTTTGCTCAAGGATGATGGTTGAGTTCCACCAAAAGGCAGGGACAGGGAAGCTTACAGGGGTGCATAGGAAGTACTGCTCATCAAAGTTTAGCTATATTGCAAATTGTAAACCAGCAAGTTTTCTTCTGGAGAACCAGTAG 1194 0.4087 MVISDKNNRNLIKPTNFQEMETKKLGNNRRALSVINQNLAEGRANPCIVNKRGFPERFAAQIAQTKENKKPDTSIMKSSEFGDAIFIDDEHKTAYDQPVPMSLEQTEPVDQMEEVEMEDIVEEPVRDIDSGDADNHLAVADYVKELYDYYRKMESIGCVSPNYMAEQDDLNEKMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLAKQSMLRKKLQLVGLVAMLLACKYEEVSVPIVGDLILISDKAYTRKQVLEMEKLMLNTLQFNMSVPTAYVFMKRFLKAAEADKKLELLAFFLIELSLVEYEMLKFPPSMLAAAAVYAAQCTAYGFKQWSKTCEWHTNYSEDQLLVCSRMMVEFHQKAGTGKLTGVHRKYCSSKFSYIANCKPASFLLENQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4007 397 Pfam Cyclin, N-terminal domain 146 271 IPR006671 -
Sto6g4007 397 SUPERFAMILY Cyclin-like 134 270 IPR036915 -
Sto6g4007 397 PANTHER CYCLINS 44 393 IPR039361 -
Sto6g4007 397 PANTHER CYCLIN-B2-1 44 393 - -
Sto6g4007 397 SUPERFAMILY Cyclin-like 272 389 IPR036915 -
Sto6g4007 397 SMART Cyclin_C_2 273 390 IPR004367 -
Sto6g4007 397 Gene3D - 159 271 - -
Sto6g4007 397 CDD CYCLIN 271 358 IPR013763 -
Sto6g4007 397 PIRSF Cyclin_A_B_D_E 2 397 IPR039361 -
Sto6g4007 397 ProSitePatterns Cyclins signature. 175 206 IPR006671 -
Sto6g4007 397 Gene3D - 146 386 - -
Sto6g4007 397 SMART cyclin_7 180 264 IPR013763 -
Sto6g4007 397 SMART cyclin_7 277 359 IPR013763 -
Sto6g4007 397 Pfam Cyclin, C-terminal domain 273 388 IPR004367 -
Sto6g4007 397 CDD CYCLIN 174 263 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4007 Sto-Chr6 43913050 43916307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4007 8 394 Core Cell Cycle Gene Families AT2G17620 59.091 9.21e-161 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4007 K21777 - gmx:100798068 579.326