Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3978 ATGGCTAACAATGGTAACAGCAAGGGGGTCGTTTACCTTCACGGTGACTTGGACTTGAGAATCATTGAGGCTCGAATGTTGCCTAACATGGACGTCGTCTCCGAGCATTTCCGCCGTTGCGTCACAGCCTGTGACACTATCAAATTCCGTTCCCCCGATTCCTCCGCCGACGCCTCCGCCGACCACAAAATCCATCGTCATAGAAAGAAGATCATCACCAGCGACCCTTACGTGACGGTTACGGTCCCACAAGCTACTGTTGCCCGCACACGTGTCGTCAAGAACGCACAAAACCCTCGCTGGGACGAACACTTCAATATCCCCTTGGCGCACCCTGTCGTCGATTTGGAATTCCGCGTCAAGGATGACGACATCTTCGGCGCAGACCTCATCGGAACCGTTAAATTTCCGGCGCAGAGGGTTGCCTCCGGCGAGAAAATCACCGGATGGTTCTCCATTATTGGATCCTCCGGTAAGCCGCCCAAGCCCGACACAGCGCTTTCTATTGAAATGACGTTCACACCAGTTTACGAGAATCCGCTGTATCTTCGCGGCATTGCGAACGATCCAGAGCACAAGGGTGTGAGGCACACGTATTTTCCGTTACGGAAAGGAAGTTCCGTTAGGCTGTACCAAGATGCGCATGTTCCTGAAGGAATGCTACCTGAGATTGAGCTAGAGGGAAACAAGTCTTTTAAGCATGAAAAATGCTGGGAAGATATTTGTTATGCTATTTCTGAGGCTCATCATATGGTGTATCTCGTGGGTTGGTCAATCTACCACAAGGTGAAGCTGATTAGGGAGCCATCCAGGCCATTGCCACGAGGGGGGGATTTAACTCTGGGTGAATTGCTCAAGTACAAGTCTCAAGAAGGGGTGCGAGTTCTGTTACTGGTTTGGGATGACAAAACTTCCCATGATAAGTTGTTCCTCAAGTCGGCTGGAGTGATGCAGACACATGATGAAGAAACCAAAAAGTTCTTTAAACATTCTTCTGTTATGTGTGTATTAGCACCTAGGTATGCTAGCGGCAAGATGGGCTATCTAAAGCAAAAGGCAAGAAATGCAAAGTGGACTGTAGGAAACATTTATCTTTCTGTTAACTCTTTCTCTTGTTTGACAATTTCAATTGAAGCTGATGTGACAATCTCCTTGCTAACTGTTGTTGGTACCGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACACAGGCTTCTGGTAATGATCGGAAGATAACTGCTTTTTTAGGAGGACTTGATCTATGTGATGGTCGCTATGACACACCTGATCATCGACTTTTTCGTGATCTTGATACTGTATATTCCGGTGACTTTCACAATCCTACATTTCCTGCTGGAAAGAGGGCTCCAAGGGAACCATGGCATGATTTGCACTGCAGAATAGATGGGCCAGCTGCATATGATGTTCTTACTAATTTTGAGCAGCGCTGGAAGAAAGCAACTAAATGGAAAGAGTTTGCAATACTTTTCAGAAAGGCTTCAAATTGGCATGATGATTCCTTACTAAAAATAGACCGCATATCCTGGATATTGAGTCCTTCCGTGTCTCCCTCAACTGATGGTTCCACATCTGTTCCTGAGGATGACCCTGCAGTATGGGTTTCCAACGAAGATGATCCTGAAAACTGGCATGTTCAGATTTTCCGCTCTATTGACTCAGGATCCCTGAAAGGGTTTCCCAAAAATGTTGATGTTGCTCTGTCCCAGAATCTTACCTGCGCAAAGAGTTTGGTAATAGATAAAAGCATTCAAACAGCATACATCCAGGCAATAAGATCTGCTcaacattttatttatatagaaAACCAATATTTTATTGGATCATCATATGCATGGCCAGATTATAAAGACGCAGGAGCTGATAATCTCATCCCAATGGAATTGGCGCTGAAAGTTGCTAGTAAAATCAGAGCCAACGAAAGATTTGCTGTTTACATTGTTTTACCCATGTGGCCAGAGGGTGATCCTAATTCTGGGGCTATGCAAGAAATTCTCTTTTGGCAGGGCCAGACAATGCAGATGATGTATGATATTGTAGCTCGAGAATTGAAATCAATGCAACGTACTGACTTGCATCCACAAGATTACCTCAACTTCTATTGCCTAGGTAACCGTGAGGATTGTCAAGAAAAGAGTTCGGACTCAAATGGTGCTTCTGTCACCAATTCATATAAGTACGGCCGATTTATGATTTATGTGCACGCTAAGGGGATGATCGTTGATGATGAGTACGTGATAATGGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACAAAAGATACAGAGATAGCTATGGGCGCATATCAACCTCATCACACTTGGTCTACGAGGAAAAGACATCCATATGgccagATTTATGGTTACAGAATGTCACTGTGGAGTGAGCATCTTGGGATGATAGAATCATGTTTTGAGGAAGCAGAGAGTTTGGAATGTGTCCGTAAAGTGAACGCAATTGCAAAagaaaattggggaaaattcgCTAATGAGAACTTCTCACAGCTGCAGGGGCATTTGCTCAGGTATCCTGTAAAGGTAGATGCTGATGGGACGGTAAGCCCACTGCCTGAACATGAGAATTTCCTGGATGTTGGTGGTAGAGTACTGGGGGCTCATTCCCCAACAATTCCAGATATCCTAACAACATAA 2679 0.4427 MANNGNSKGVVYLHGDLDLRIIEARMLPNMDVVSEHFRRCVTACDTIKFRSPDSSADASADHKIHRHRKKIITSDPYVTVTVPQATVARTRVVKNAQNPRWDEHFNIPLAHPVVDLEFRVKDDDIFGADLIGTVKFPAQRVASGEKITGWFSIIGSSGKPPKPDTALSIEMTFTPVYENPLYLRGIANDPEHKGVRHTYFPLRKGSSVRLYQDAHVPEGMLPEIELEGNKSFKHEKCWEDICYAISEAHHMVYLVGWSIYHKVKLIREPSRPLPRGGDLTLGELLKYKSQEGVRVLLLVWDDKTSHDKLFLKSAGVMQTHDEETKKFFKHSSVMCVLAPRYASGKMGYLKQKARNAKWTVGNIYLSVNSFSCLTISIEADVTISLLTVVGTVFTHHQKCVIVDTQASGNDRKITAFLGGLDLCDGRYDTPDHRLFRDLDTVYSGDFHNPTFPAGKRAPREPWHDLHCRIDGPAAYDVLTNFEQRWKKATKWKEFAILFRKASNWHDDSLLKIDRISWILSPSVSPSTDGSTSVPEDDPAVWVSNEDDPENWHVQIFRSIDSGSLKGFPKNVDVALSQNLTCAKSLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPDYKDAGADNLIPMELALKVASKIRANERFAVYIVLPMWPEGDPNSGAMQEILFWQGQTMQMMYDIVARELKSMQRTDLHPQDYLNFYCLGNREDCQEKSSDSNGASVTNSYKYGRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGTKDTEIAMGAYQPHHTWSTRKRHPYGQIYGYRMSLWSEHLGMIESCFEEAESLECVRKVNAIAKENWGKFANENFSQLQGHLLRYPVKVDADGTVSPLPEHENFLDVGGRVLGAHSPTIPDILTT 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3978 892 Gene3D C2 domain 14 184 IPR035892 -
Sto6g3978 892 SMART pld_4 391 426 IPR001736 GO:0003824
Sto6g3978 892 SMART pld_4 737 764 IPR001736 GO:0003824
Sto6g3978 892 PANTHER PHOSPHOLIPASE D DELTA 9 892 - -
Sto6g3978 892 Gene3D Endonuclease Chain A 225 508 - -
Sto6g3978 892 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Sto6g3978 892 Pfam C2 domain 15 153 IPR000008 -
Sto6g3978 892 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 175 IPR035892 -
Sto6g3978 892 SUPERFAMILY Phospholipase D/nuclease 586 805 - -
Sto6g3978 892 PANTHER PHOSPHOLIPASE D 9 892 IPR015679 -
Sto6g3978 892 Pfam PLD-like domain 596 774 IPR025202 -
Sto6g3978 892 SUPERFAMILY Phospholipase D/nuclease 198 496 - -
Sto6g3978 892 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 391 426 IPR001736 GO:0003824
Sto6g3978 892 PIRSF PLD_plant 2 892 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sto6g3978 892 Gene3D Endonuclease Chain A 558 788 - -
Sto6g3978 892 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 737 764 IPR001736 GO:0003824
Sto6g3978 892 CDD C2_plant_PLD 9 174 - -
Sto6g3978 892 Pfam Phospholipase D Active site motif 391 426 IPR001736 GO:0003824
Sto6g3978 892 SMART C2_3c 16 150 IPR000008 -
Sto6g3978 892 Pfam Phospholipase D C terminal 811 881 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3978 Sto-Chr6 43728904 43734582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3978 7 728 Phospholipase D Gene Family (Wang group) AT4G35790 65.337 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3978 K01115 - gmx:100801787 1410.97