Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3968 ATGGATTTTGTGGCCAATCCATTTCCTTTGCCTTCCTCCTTGTTGGCTTCCTTCGGGAATTTCGTTGAAAGGGTTAAAGACATTAGCAGCCTCGCCGTTTCTGTCATAATTGGGAACATCTTCTCTGCGATCTTGACTTTTTGCTTTGCATTAGTGGGTACTTTGTTAGGAGCCATGACTGGAGCTTTGATAGGCCAAGAAACTGAAAGTGGCTTCATTAGAGGTGCTGCAGTTGGTGCCATTTCTGGAGCTGTTTTCTccattgaagtatttgaatctTCTCTTGTTCTTTGGCAATCTGACGAATCTGGGATTGGATGTCTCTTATATTTGATTGATGTTATTGCTAGCCTACTTAGTGGGAGGCTTGTGCGTGAGAGGATAGGTCCAGCCATGTTAAGTGCAGTACAAAGTCAGGTAATTTGCTTGCTTCTTTTGCAAGTGCAGATGGGTGCTGTAGAAACCACCTTTGATGAGGTTCAAAACATCTTTGACACTGGTGGGTGCAAGGGTTTGACAGGAGACTCTGTAGAAAAGATCCCAAAAATCACAATCACAAGTGACAACAATGTGGATGCTTCTGGTGAAAGAGTTTCTTGCTCAGTTTGCCTCCAGGACTTTCAGCTCGGAGAGACAGTTAGAAGCTTACCTCAGTGCCATCACATGTTCCATCTACCTTGCATAGATAAATGGCTTTTCAGGCACGGTTCTTGTCCACTATGCAGAAGGGATCTgtaa 738 0.4295 MDFVANPFPLPSSLLASFGNFVERVKDISSLAVSVIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQVICLLLLQVQMGAVETTFDEVQNIFDTGGCKGLTGDSVEKIPKITITSDNNVDASGERVSCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLFRHGSCPLCRRDL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3968 245 CDD RING-H2_PA-TM-RING 200 242 - -
Sto6g3968 245 SUPERFAMILY RING/U-box 199 245 - -
Sto6g3968 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 245 IPR013083 -
Sto6g3968 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 16 245 - -
Sto6g3968 245 SMART ring_2 200 241 IPR001841 -
Sto6g3968 245 ProSiteProfiles Zinc finger RING-type profile. 200 242 IPR001841 -
Sto6g3968 245 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 245 IPR044523 -
Sto6g3968 245 Pfam Ring finger domain 199 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3968 Sto-Chr6 43682963 43684460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3968 22 245 C3H Transcription Factor Family AT5G66070 75.446 6.41e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3968 - - ccaj:109800586 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3968 6 43682963 43684460 Sto11g1439 11 13694709 13696047 CCT