Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3961 ATGTCTAAGGAAGTGAATGAAGAGGGACAAACACAGACCGAAGAGAAGCAGATGAAAGACTACGCAGAGCCTCCTGCAGTAGCTCTAATGGAGATGGGAGAGCTCAAGCGTTGGTCCTTCTACAGAGCTATGATAGCTGAGTTTGTGGCTACACTTCTCTTTCTCTACGTCACCATAGCCACAGTCATTGGGCACAAGAAACAAACAGGAGGAACCTGTGATGGCGTGGGCCTTCTCGGCATTGCCTGGTCCTTTGGCGGCATGATCTTCATTCTTGTATACTGCACCGCTGGAATCTCAGGGGGTCATATAAACCCTGCGGTGACGTTGGGGCTACTGGTAGCGAGGAAGGTGTCCTTGGTTAGGGCAGTGGGGTACATGGTGTCACAGTGCATGGGAGGTGTTTGTGGCGTGGCCTTAGTGAAGGCGTTGATGAAGAATTACTATAATGGGCATGGAGGTGGTGCCAATGCAGTAGCAGCAGGCTACTCCAAGGGCAATGCCTTGGGAGCTGAGATCATTGGTACTTTCGTGCTGGTTTACACGGTTTTCTCAGCTACTGATCCCAAAAGGAGTGCACGTGACTCCCACGTTCCTGTTTTGGCTCCATTACCCATAGGTTTTGCTGTGTTTATGGTGCACTTGGCTACCATTCCTATCACCGGTACTGGCATCAACCCTGCTAGGAGTTTTGCTGCAGCACTTGTCTACAACAGTACCAAAGTCTGGGATGATCAGTGGATATTCTGGGTTGGACCCTTCCTTGGAGCAATTGTTGCAGCAACTTACCACCAATATATACTGAGAGCAGGAGCTGCCAAGGCTTTGGGATCTTTCTATGCCaatcataccaaataa 858 0.493 MSKEVNEEGQTQTEEKQMKDYAEPPAVALMEMGELKRWSFYRAMIAEFVATLLFLYVTIATVIGHKKQTGGTCDGVGLLGIAWSFGGMIFILVYCTAGISGGHINPAVTLGLLVARKVSLVRAVGYMVSQCMGGVCGVALVKALMKNYYNGHGGGANAVAAGYSKGNALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFAAALVYNSTKVWDDQWIFWVGPFLGAIVAATYHQYILRAGAAKALGSFYANHTK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3961 285 Pfam Major intrinsic protein 34 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 CDD MIP 42 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Sto6g3961 285 SUPERFAMILY Aquaporin-like 34 269 IPR023271 -
Sto6g3961 285 PANTHER BNAC03G65520D PROTEIN 1 281 - -
Sto6g3961 285 Gene3D Glycerol uptake facilitator protein. 27 285 IPR023271 -
Sto6g3961 285 TIGRFAM MIP: MIP family channel proteins 46 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto6g3961 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 281 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3961 Sto-Chr6 43640360 43641515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3961 1 285 Major Intrinsic Protein MIP AT4G35100 79.298 5.90e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3961 K09872 - ath:AT4G35100 456.832