Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3944 ATGGGTAGCAAGTCCAGATTTGTGTTTGATAGATTATGGGGTTTTGCCACTTCTTGGAAGAAAAGTAGCACACCACATGCTCGAAGAATTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCCTCTACTCACTGCCTCTCTTCCTACTACAGTGTCTTTGTGGTTCGCCTAGCAATCATGATCATGCTAGCTATCTTGATTGGGCTGCTCACTATACTAACATGGCATTTCACTAAGATTTATACAGCAAAATCACTTGACAGCTTAGCCTATGGCCTTCGTTATGAATTACTACAACGCCCCATCTTACGGATGTGGAATATTTTGAATTCTACTGCTGAAATTACAACAGCTCAGGTTAAACTATCACAGTATGTAATAAAAAAGTACAGCAACCCTGCCAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAAGTCCGTAACCTGGGCACTCTTTTCTAGCCGTAAAGCTCTCAATTCAATAACCATCAATTACAGAAACGGCTTTGTTCAAGCCTTCCATAGAGACATTAAGGGTAACAATACGTTTTACATCTACTCTGATCTTGCAAACTACTCCATAGGTGCCTCTAGAGAGATCAACTCACTCTCAACAAATCAAGATTGGAATGATGAAGCCATTCATGGTAACAATTCTGCAATTTGGTATCGTGAACCACTTGACCCTATAAGTGGTGAGAAGATTGGAAAAGCTAAGAAAATTGCACCAGAAGACTTGATTAATATTGCTGGCCTTTCTCAAGTACCTGATGGGGTAGCTTCGTGGCAGGTTGCTGTGAGCAAGTTTACAGATTCACCATTGCTTTCTGCTGCACTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTAGCTGTTGTGGGTGTCACAACTGCACTTTATAGTGTTGGCCAGTTAATGAAGGAACTAGTTGAGTTTCATAGTGGTTATATCTATTTGACCTCCCAAGAAGGTTACTTGCTTGCCACTTCCACAAATGTTCCGCTGCTAGCGAATTCAACGAAGCCACTCAGGCTTAAGATGGCTGTTGATTGTGAAAATGATGTAATAAGAATGGGAGCTCAATGGTTAAAGAGAACCTATGGGAACAATTTCCCTCCAAGTCATGAGGTTCATGTGGAGGATGTCAGGCTAGGCCACCAGGAATATTATATTGACTCATTCTTTCTAAATTTGAAGAGACTTCCTCTGGTGGGTGTTATCATTATACCGAGGAAGTATATAATGGGAAAGGTAGATGAAAGAGCATTCAAAACGTTGGTTATTCTGATATCTGCATCGTTGTGTATATTAGTCATTGGATGTGTTTGCATTTTGATACTGACGAATGGGGTATCGAAGGAAATGAAACTAAGAGCAGAACTAATCAGTCATCTGGAAGCAAGAAGAAAGGCAGAGGCTTCAAGCAACTATAAAAGTCAGTTTCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTGATAGGGTTGCTTGACATTCTAATATCCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACTCAGATAAGACAATGCTCAACTGCCTTACTCCGTCTTCTCAACAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTGTTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGATCTATCTGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCaaatttgatcaacaattcgaTTAAGTTTACTCCATCGGGTCACATTATTCTTCGAGGATGGTGTGAGCATCCAAATTCATGCAGTGATAGTACAAATCTTCCTCTTAATCAGAAGAAGTCACGGACTCCACAGAAGACCAGAATGAAGCAACATGAAGAAAACCATGCAAGGAAGGCATCCAAGAAAGATAACAAAATGATTCTTTGGTTTGAAGTAGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTGCGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACTACTAGACTGCATGGAGGCACCGGTCTTGGACTTTGCATAGTGAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTATCAAAAAGGAGGGCCCAGGAACTCTGATGCGTTTATTCTTGCTTCTCAATACACCCATGGATGCCACAGAACAACATGGTCGAGTAGATTATGCAGAGAATAGCTTTGTGGTATTGCTTGCTCTATATGGCAACATGGGTCGATCAATCACATCTAACTGGTTGCAGAAAAATGGGGTGTGCACTCTGGTGGCATCTGAATGGAATGGACTGACACAAATCCTGAGGGAACTCTTCCATGCTAGAAGTTCAGTCCATAATAATGGCTTTGATGTACATTATCCAGTACATGAGAATTTGAAGTCCAAATTACTCAACATAGAAGAAATGAGGAACCCAGCATTTGTCATTGTTGTTGACATTGGACTACTTGATCTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTCCACATGTACTTTGGGAGAGCAAAGTTTGCATGGGTGCTAAATCATGACACCTCCAATACCATAAAGACGGAGCTTCGCAGGAAGGGGCATATATTGATGGTAAACAAACCCCTCTACAAAGCAAAAATGATTCATATTTTGGAAGTTGTcagaaaggaaagaaatattgagctacaaaagaaaaatatgagtGCTTCAAGAATCACAATGAAAGAGGGTGATATGCATGAGTTTCTCGAGATTGATTCTACTCATTTTGATGCTGCTAGCTCTGACAGTTCTGACATGTCTGAAATGGGTGGTTCTAATAGTTCCAATGGAGATAAACAAAGGGAAAGGATAGTAAAACCCTATCCATCGTCACAATACCAGACATCAAACTGCTTAGTTGGATTAACCAATGAATATCCAGAAGATAACATTTCAAGGAAAGAAGAGTCGTGTCAGAGCAGCCCCAACTCCCATGATATCCTTGAAGATGCACAACCAAAATTGCTGTCCTCTCAACACACATCCTTTCCAACCGAAGCTCAATGCAGAGATTCTGAATATGGGGAAACAAATAGAGTCAGTTGCTCAAGTAAATCCGCAAACGTTAAGAAATCTCTTGAAGGCCTGAGGATATTGCTTGCAGAAGACACTCCAGTAATACAAAGGGTTGCAACCATAATGCTAGAAAAAATGGGAGCTACAGTTGTTGCAGTAGGTGATGGACAACAGGCAGTAGATGCTCTGAATGGCACACTCAGTGCAGAAGATAGTAGAAGCACAAGATCTCAAACAGAAATTTTCAGTTGGCCCCCATATGACTTGATTCTAATGGATTGTCAGCATAATGTCCTGAATTTATGGTTTCTTCAGATGCCAAAGATGGATGGTTATGAAGCGACAAAAGCAATAAGGAAATCAGAAGAAGGAACTGGCTTTCACATTCCAATTGTTGCTCTTACAGCACATGCAATGTCATCTGATGAAGCCAAGTGCTTGAAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTCATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCCTCAACTTAA 3684 0.4028 MGSKSRFVFDRLWGFATSWKKSSTPHARRIFHRDVEKEEFQYASTHCLSSYYSVFVVRLAIMIMLAILIGLLTILTWHFTKIYTAKSLDSLAYGLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIKKYSNPANQAEQVELYEAMKSVTWALFSSRKALNSITINYRNGFVQAFHRDIKGNNTFYIYSDLANYSIGASREINSLSTNQDWNDEAIHGNNSAIWYREPLDPISGEKIGKAKKIAPEDLINIAGLSQVPDGVASWQVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSQEGYLLATSTNVPLLANSTKPLRLKMAVDCENDVIRMGAQWLKRTYGNNFPPSHEVHVEDVRLGHQEYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRQCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCEHPNSCSDSTNLPLNQKKSRTPQKTRMKQHEENHARKASKKDNKMILWFEVDDTGCGIDPSKWDCVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVIKKEGPGTLMRLFLLLNTPMDATEQHGRVDYAENSFVVLLALYGNMGRSITSNWLQKNGVCTLVASEWNGLTQILRELFHARSSVHNNGFDVHYPVHENLKSKLLNIEEMRNPAFVIVVDIGLLDLSTDIWKEQLNFLHMYFGRAKFAWVLNHDTSNTIKTELRRKGHILMVNKPLYKAKMIHILEVVRKERNIELQKKNMSASRITMKEGDMHEFLEIDSTHFDAASSDSSDMSEMGGSNSSNGDKQRERIVKPYPSSQYQTSNCLVGLTNEYPEDNISRKEESCQSSPNSHDILEDAQPKLLSSQHTSFPTEAQCRDSEYGETNRVSCSSKSANVKKSLEGLRILLAEDTPVIQRVATIMLEKMGATVVAVGDGQQAVDALNGTLSAEDSRSTRSQTEIFSWPPYDLILMDCQHNVLNLWFLQMPKMDGYEATKAIRKSEEGTGFHIPIVALTAHAMSSDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKTTSST 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3944 1227 MobiDBLite consensus disorder prediction 956 979 - -
Sto6g3944 1227 MobiDBLite consensus disorder prediction 631 664 - -
Sto6g3944 1227 SMART HisKA_10 481 547 IPR003661 GO:0000155|GO:0007165
Sto6g3944 1227 MobiDBLite consensus disorder prediction 1035 1054 - -
Sto6g3944 1227 Gene3D - 1052 1224 - -
Sto6g3944 1227 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 468 548 IPR036097 GO:0000155|GO:0007165
Sto6g3944 1227 SUPERFAMILY CheY-like 1071 1221 IPR011006 -
Sto6g3944 1227 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 536 743 IPR036890 -
Sto6g3944 1227 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 745 IPR003594 -
Sto6g3944 1227 CDD HisKA 482 543 IPR003661 GO:0000155|GO:0007165
Sto6g3944 1227 MobiDBLite consensus disorder prediction 956 975 - -
Sto6g3944 1227 ProSiteProfiles Histidine kinase domain profile. 488 747 IPR005467 -
Sto6g3944 1227 Pfam His Kinase A (phospho-acceptor) domain 482 547 IPR003661 GO:0000155|GO:0007165
Sto6g3944 1227 Pfam Response regulator receiver domain 1075 1216 IPR001789 GO:0000160
Sto6g3944 1227 Gene3D - 469 548 - -
Sto6g3944 1227 PRINTS Bacterial sensor protein C-terminal signature 672 686 IPR004358 GO:0016310|GO:0016772
Sto6g3944 1227 PRINTS Bacterial sensor protein C-terminal signature 690 700 IPR004358 GO:0016310|GO:0016772
Sto6g3944 1227 PRINTS Bacterial sensor protein C-terminal signature 707 725 IPR004358 GO:0016310|GO:0016772
Sto6g3944 1227 CDD REC_hyHK_CKI1_RcsC-like 1075 1217 - -
Sto6g3944 1227 Gene3D - 549 748 IPR036890 -
Sto6g3944 1227 MobiDBLite consensus disorder prediction 650 664 - -
Sto6g3944 1227 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1222 - -
Sto6g3944 1227 ProSiteProfiles Response regulatory domain profile. 1074 1221 IPR001789 GO:0000160
Sto6g3944 1227 SMART REC_2 1073 1217 IPR001789 GO:0000160
Sto6g3944 1227 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1222 - -
Sto6g3944 1227 SMART HKATPase_4 594 747 IPR003594 -
Sto6g3944 1227 MobiDBLite consensus disorder prediction 631 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3944 Sto-Chr6 43536602 43542968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3944 1 1225 Histidine Kinase Gene Family AT2G17820 64.423 0.0 1576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto6g3944 HATPase_c 1.8e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3944 - - gmx:100776856 1860.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3944 6 43536602 43542968 Sto11g1463 11 13883443 13891196 CCT
Sto6g3944 6 43536602 43542968 Sto6g3944 6 43536602 43542968 ECH