Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3936 ATGGCGGAGGAGAGATCCACTGGTGTGGTTCAGTGGTTCAACGATGCTAAAGGCTTTGGCTTTATCAAGCCCGACGATGGAGGAGAAGATCTCTTTGTTCATCAATCTTCCATCAGATCCGACGGATATCGTAGTCTTGTAGAAGGCGATTGCGTCGAGTTCGTGATTGCCTCTGGTGACAGGGAGAAAACCAAAGCCATTGATGTCACTGGCCCTAATGGAGCTCCTCTACAATCTAAGAAAGACAATTACGGTAGCCGCGGCGGCGAAGGCGGATATGGCTTTAGCGGTGGATGGAGAGGGTCCTGCTTTAGGTGCGGTGAGTATGGGCACATGGCGAGGGACTGCACCAAGGGAAGCAGCGGCGGCGGAGGTTGTTTCAGGTGTGGGGAAGTGGGTCACTTGGCCAGGGATTGCAGCAAAGACAGCGGAAGGTTTGGCGGCGGCAGCAGCAGCGGTGGTGCTGGAGGAAATACTTGCTTTAACTGTGGCAAGCCTGGGCATTTTGCGAGAGAGTGCCCTGAGGCCTCTGGATGA 537 0.5456 MAEERSTGVVQWFNDAKGFGFIKPDDGGEDLFVHQSSIRSDGYRSLVEGDCVEFVIASGDREKTKAIDVTGPNGAPLQSKKDNYGSRGGEGGYGFSGGWRGSCFRCGEYGHMARDCTKGSSGGGGCFRCGEVGHLARDCSKDSGRFGGGSSSGGAGGNTCFNCGKPGHFARECPEASG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3936 178 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 92 - -
Sto6g3936 178 PANTHER COLD SHOCK DOMAIN PROTEIN 2 86 177 - -
Sto6g3936 178 Gene3D - 1 83 IPR012340 -
Sto6g3936 178 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Sto6g3936 178 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Sto6g3936 178 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Sto6g3936 178 SUPERFAMILY Retrovirus zinc finger-like domains 100 142 IPR036875 GO:0003676|GO:0008270
Sto6g3936 178 ProSiteProfiles Zinc finger CCHC-type profile. 103 118 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 SMART c2hcfinal6 102 118 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 PANTHER COLD SHOCK PROTEIN 2 1 92 - -
Sto6g3936 178 PANTHER COLD SHOCK PROTEIN 2 86 177 - -
Sto6g3936 178 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Sto6g3936 178 Gene3D - 124 147 - -
Sto6g3936 178 Gene3D - 154 178 - -
Sto6g3936 178 Gene3D - 99 123 - -
Sto6g3936 178 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Sto6g3936 178 SUPERFAMILY Retrovirus zinc finger-like domains 142 176 IPR036875 GO:0003676|GO:0008270
Sto6g3936 178 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Sto6g3936 178 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Sto6g3936 178 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Sto6g3936 178 ProSiteProfiles Zinc finger CCHC-type profile. 160 175 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 SMART csp_8 7 72 IPR011129 GO:0003676
Sto6g3936 178 Pfam Zinc knuckle 158 175 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Sto6g3936 178 Pfam Zinc knuckle 102 118 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3936 Sto-Chr6 43475767 43476495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Sto6g3936 CSD 1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3936 K09250 - gmx:100806783 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3936 6 43475767 43476495 Sto6g3936 6 43475767 43476495 ECH