Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3931 ATGAATCAGTGGAAGCCTGAAGATTTATCTAAATCTGCATCTGTTGCAGCAGATTTAACACCTTCTTCGCTTCAGCCTCAGCAGAGGCCTGAAGCTGAAGCACAGGATCCAGTTGCTGCAAGAAAACTTCAGAAGGCAGACCGTGAGAAACTGAGGAGGGATCGACTAAATGAGCACTTCCTAGAGCTGGGAAACACATTAGATCCTGATAGGCCAAAAAATGATAAGGCAACCATCCTTACAGACACAATCCAAGTGCTAAAGGATTTAACTGCTGAAGTGAATAGACTAAAAGCTGAGCATGCAACACTTTCTGAGGAATCACATGAACTCATGCAAGAGAAGAATGAACTCAGAGAAGAGAAGACGTCTCTAAAATCTGATATTGAAAATCTTAATGCTCAGTATCAGCAGAGAGTGAGAGTGACGTTCCCATGGACTGCAATTGACCATTCTGTTGTCATGCCTCCGCCTTATTCATATCCACTTCCTATACCCATCCCTCCTGCTCCAATTTCCATTCATCCATCACTTCAGCCATTTCCCTTCTTTGGAAACCAAAATCAAGGTCCAATTCCCAATCCTTGTTCCACATTTGTCCCCTTCTCTGCTCCTGTTAATCCCCCACTCGAGCAGCCAACCGCCCAGTATGCTTCCACATCCCACATTTCAAGCAAGCAAGATTCGAGAAGCAAGTCACCAGATCACGAAAGGCCAGAAAGATGTGGGGAGTCTAACGACGTGGCTACGGAGCTTGAACTTAAGATGCCTGGCCAGAAAGATGTGGGGAGTCTAACGACGTGGCTACGGAGCTTGAACTTAAGATGCCTGGATCATCGACACGACAGGcaaGAATCCTGCACTGGAGGAAGGAAGGGCAAGCATTCAACGAGGAAGGAGAGAAATGTCACAGAGGGGAGTTCTTCAAGCAGGCAGTCTTCATCTCAAGGACTTCAAGATAGTTCCAACAGTGTGGGTGATATCCCTGAAAAGGCTGACAAGTGA 1005 0.4617 MNQWKPEDLSKSASVAADLTPSSLQPQQRPEAEAQDPVAARKLQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQVLKDLTAEVNRLKAEHATLSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRVTFPWTAIDHSVVMPPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNQGPIPNPCSTFVPFSAPVNPPLEQPTAQYASTSHISSKQDSRSKSPDHERPERCGESNDVATELELKMPGQKDVGSLTTWLRSLNLRCLDHRHDRQESCTGGRKGKHSTRKERNVTEGSSSSRQSSSQGLQDSSNSVGDIPEKADK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3931 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 90 IPR011598 GO:0046983
Sto6g3931 334 MobiDBLite consensus disorder prediction 1 30 - -
Sto6g3931 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 111 IPR036638 GO:0046983
Sto6g3931 334 Gene3D - 38 119 IPR036638 GO:0046983
Sto6g3931 334 MobiDBLite consensus disorder prediction 203 247 - -
Sto6g3931 334 CDD bHLH_AtILR3_like 45 119 - -
Sto6g3931 334 PANTHER TRANSCRIPTION FACTOR BHLH11 15 330 - -
Sto6g3931 334 MobiDBLite consensus disorder prediction 209 227 - -
Sto6g3931 334 MobiDBLite consensus disorder prediction 35 51 - -
Sto6g3931 334 Coils Coil 80 135 - -
Sto6g3931 334 SMART finulus 46 96 IPR011598 GO:0046983
Sto6g3931 334 MobiDBLite consensus disorder prediction 1 51 - -
Sto6g3931 334 MobiDBLite consensus disorder prediction 306 326 - -
Sto6g3931 334 PANTHER TRANSCRIPTION FACTOR BHLH121 15 330 IPR044579 GO:0003700|GO:0055072
Sto6g3931 334 MobiDBLite consensus disorder prediction 282 334 - -
Sto6g3931 334 MobiDBLite consensus disorder prediction 282 305 - -
Sto6g3931 334 Pfam Helix-loop-helix DNA-binding domain 41 90 IPR011598 GO:0046983
Sto6g3931 334 MobiDBLite consensus disorder prediction 228 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3931 Sto-Chr6 43444896 43448337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3931 31 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.780 8.49e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto6g3931 HLH 7.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3931 - - rcu:8268712 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3931 6 43444896 43448337 Sto6g3931 6 43444896 43448337 ECH