Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3922 ATGGCCATCAGAAAATCCAACAAGTTACCACAAGCAGTAGTTCTGAAGCAAATCCTCAAGAGATGCTCCAGCTTTGGGAAGAAGCAGGGTTACAATGAAGTGGGTCTTCCTGATGATGTTCCAAAAGGCCATTTTGCAGTTTATGTTGGGGAGAACAGAACCAGATACATTATCCCTATTTCCTCTCATCTGAGTGTTTGTTCCCAGGGAGCCGCCATGGGAAGAGTTATCCGAGCACAACGTAAGGGTGCTGGTTCCGTCTTTAAATCCCACACCCACCACCGCAAGGGTCCTGCCAGGTTCAGGAGCCTTGACTTCGGTGAGAGAAATGGGTATCTCAAAGGTGTGGTCACCGAAATCATTCACGACCCTGGTCGTGGTGCCCCTCTTGCCAAGGTCACTTTCCGCCACCCATTTAGGTACAAGAAGCAGACTGAGCTCTTTGTTGCTTCTGAGGGTATGTACACTGGCCAATTCATCTACTGCGGCAAGAAAGCCACTCTTGTTGTTGGTAACGTCTTGCCTATCAGATCCATTCCCGAGGGAGCTGTTATTTGCAATGTTGAGCACCACGTTGGTGACCGTGGCGTCTTTGCTAGGTGTTCTGGTGATTACGCTATTGTTATCAGCCACAACCCCGATAACGACACCTCTAGGATCAAGCTTCCTTCTGGTGCAAAGAAGATTGTTCCAAGTGGCTGTCGGGCCATGATTGGGCAGGTTGCTGGTGGAGGGAGAACTGAGAAGCCCCTTCTTAAAGCTGGTAACGCTTACCACAAGTTTAGAGTGAAGAGAAACTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGACATGCAAGTACGGTCAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCCGCAACTGCTGCTAAAGCTGATAAGAGTGCTTGA 1002 0.503 MAIRKSNKLPQAVVLKQILKRCSSFGKKQGYNEVGLPDDVPKGHFAVYVGENRTRYIIPISSHLSVCSQGAAMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAKVTFRHPFRYKKQTELFVASEGMYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKSA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3922 333 MobiDBLite consensus disorder prediction 314 333 - -
Sto6g3922 333 Pfam Ribosomal Proteins L2, C-terminal domain 170 297 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sto6g3922 333 Gene3D - 162 241 IPR014722 -
Sto6g3922 333 Pfam Auxin responsive protein 34 61 IPR003676 GO:0009733
Sto6g3922 333 SMART Ribosomal_L2_C_2 168 303 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sto6g3922 333 PANTHER 60S RIBOSOMAL PROTEIN L8 73 331 - -
Sto6g3922 333 SUPERFAMILY Nucleic acid-binding proteins 72 169 IPR012340 -
Sto6g3922 333 SUPERFAMILY Translation proteins SH3-like domain 171 318 IPR008991 -
Sto6g3922 333 Gene3D Ribosomal protein L2, domain 3 242 319 IPR014726 -
Sto6g3922 333 PANTHER RIBOSOMAL PROTEIN L2 73 331 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sto6g3922 333 MobiDBLite consensus disorder prediction 282 302 - -
Sto6g3922 333 SMART Ribosomal_L2_2 83 162 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sto6g3922 333 Gene3D - 73 158 IPR012340 -
Sto6g3922 333 Pfam Ribosomal Proteins L2, RNA binding domain 85 162 IPR022666 GO:0003735|GO:0005840|GO:0006412
Sto6g3922 333 ProSitePatterns Ribosomal protein L2 signature. 269 280 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3922 Sto-Chr6 43381884 43393210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3922 73 330 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.411 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3922 K02938 - qsu:111987309 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3922 6 43381884 43393210 Sto11g1494 11 14182958 14184842 CCT
Sto6g3922 6 43381884 43393210 Sto6g3922 6 43381884 43393210 ECH