Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3920 ATGACCTTTGATTTGAATCTTAGAGCGTTTAATAAAGAGTTGGTCAAATTGTTCTTGTCTGAGGATTGCCCTTCTAAAGTTGGCCAGAAATCTCAAGATCATCTTCAAGCCAAGACATCATCCATTTTGCCTTCGAGTACTAATGAAACTTATGATTTACCTCCTGGGTTTGAAGGCAATCATTTTTTGAATCAATCGAAGTGTGAACTCTCCCACATTTCTCAGATCAAATGGAAAGCCCCTCCCTTGTTTGTTCTCCGTTATAACTGGCAAGTTGCAGCTGGTGAAGAAAGTAGGGAGAAGGAGGACCAAAAGCTAAGAGAAATGAGAGTGCTTGAAGCAGTATATCCTCGCCCTTCTGCTATTCCTCCTAGCCCTTCTGTTTCTCTGGATGTGGAGGAGGAAGATTATGATGATAACCTCACTCCTGTCATCCCCATTCTTCCTATTGAGGAAGAAGAGCTTATGGATTCTAACCCTCGATTGCCAACACAAAGTCAAACAGACACTTTTGCTGCGGTTCAGCCGCAAAGCTTGCACCAATATGTACCAGCAACTAATGCACCCTCAAGTTCACAGTCTTTTACTCCTCCTACTCATGCCTCACCTGGGCCATCTGGTATGGATGCAGATCTTGCTGCAGCCTCTGCTGTTGTTACTGCTATTATGAAGAATAATGAGCAAGGCAGCATGATTGACATGGATCTACTCGTTAGAATACTTAATGATCCATTAATGATTGAGAAATTGATTAAAGATCAAAATAGAACTGCAGCGACCACTGTTAGTGTATCATCCTCGAATGCAGTGGGTATATTAGCTGATTCTGGGTTAAAGCCACAAACTTCATCAGTTCCGCTATTGCATACACTAGATAAGACATCATCAACGTCGTCGTTTCCATTGTCTGGGCCTATGCCTGGTAAACTAGGAACTCCCTCAGTCCCATTGCCTTCTCATACAACTCCAGATATGCACAAACCTGTGAACAAAACCAATCACCATGTGTCAAATGGAGTGGCGCCTTCTTTAAGCGCCCAGCCCCCTCAACAAGATAGTATTGTAGCATCTGGGGTGAAGCGAACCGCATCCATGGCTTCCATAGCATCCAGTGAACCAAGCACTGTGCCATTACCTTCAACTGGTGTGAACTTGCTTTGTGTACCAAATCAGGTGCGACCCCCTGCTACAATGGCTTACCATCCTAGTACAGGTTCTGCTTTCTCTGGGATGGAAAGTCATCCTGTGAAGGACCTCAGCTATTATAAGAGCCTCATTAGGCAACATGGTGCAGATGGTAACGATAAGCAAGAGACACAGGACTCCCAAATAGGTATCCGTCAAAGTAATTACAAAGATTTGAAACCGGTACATAACATTAAACCAGGAGAAGTGAATTTCAAAATCCAGAAACCTTGCTTTTACTTTAACACCCCAAGGGGTTGTCGAAATGGTTCCACCTGTCCCTACCAACATGACATGTCGACTCAGTGGGGATCTGTTAACATCCTAGGGGCCCAGAATGCAAAGAGAGTTAAACTAGGACCTGAAATCAAAGTGAGGCAGAGGGAGAGGGAAGGGTTCTAA 1587 0.4405 MTFDLNLRAFNKELVKLFLSEDCPSKVGQKSQDHLQAKTSSILPSSTNETYDLPPGFEGNHFLNQSKCELSHISQIKWKAPPLFVLRYNWQVAAGEESREKEDQKLREMRVLEAVYPRPSAIPPSPSVSLDVEEEDYDDNLTPVIPILPIEEEELMDSNPRLPTQSQTDTFAAVQPQSLHQYVPATNAPSSSQSFTPPTHASPGPSGMDADLAAASAVVTAIMKNNEQGSMIDMDLLVRILNDPLMIEKLIKDQNRTAATTVSVSSSNAVGILADSGLKPQTSSVPLLHTLDKTSSTSSFPLSGPMPGKLGTPSVPLPSHTTPDMHKPVNKTNHHVSNGVAPSLSAQPPQQDSIVASGVKRTASMASIASSEPSTVPLPSTGVNLLCVPNQVRPPATMAYHPSTGSAFSGMESHPVKDLSYYKSLIRQHGADGNDKQETQDSQIGIRQSNYKDLKPVHNIKPGEVNFKIQKPCFYFNTPRGCRNGSTCPYQHDMSTQWGSVNILGAQNAKRVKLGPEIKVRQREREGF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3920 528 MobiDBLite consensus disorder prediction 29 48 - -
Sto6g3920 528 MobiDBLite consensus disorder prediction 184 209 - -
Sto6g3920 528 ProSiteProfiles Zinc finger C3H1-type profile. 467 495 IPR000571 GO:0046872
Sto6g3920 528 MobiDBLite consensus disorder prediction 293 323 - -
Sto6g3920 528 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 15 514 - -
Sto6g3920 528 MobiDBLite consensus disorder prediction 184 201 - -
Sto6g3920 528 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 15 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3920 Sto-Chr6 43369675 43372007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3920 75 157 Homeobox Transcription Factor Family AT4G02560 42.169 3.19e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto6g3920 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3920 - - adu:107488052 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3920 6 43369675 43372007 Sto6g3920 6 43369675 43372007 ECH