Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3916 ATGCGAACTAGAAACGGCGATTCTTCCAAAGCAGCGGCGGCTAAGAAGACTCCGCCGGCGAGAAAATCCGCATCCAAAAGCCCCGCTAACGCAAAATCCCCCCAGACACCGCGCACTTCTACGATCAGAACGAGGCAGGGAAAGAAAAACGAGGTCTCTCCCCTACAAAACTCAAGCCTTGATGAGAAACCGGAGCAATCATCTGAGAAGACAAAAGCAGCTGTTAGTGCCTCTCAAGTGACACCAGATACAAAAGTTGCTACACCTGCGAAGTCAACACCAAAGAGGACACCGGGGAGACCAAGAAAAACAGTTTCCACTCAGAAACAGGGAGAACAAGTGGTGGCAATAGCTGATGAAACTCCAAAAGGGGATGATTTTGCTGTAGTAGAGAAAGCGGAGGAGCCGCAAAATGTTGAAAGAGTCGAAGCAAATGAAAATGAATGTGAAAAGGTGGGGAAACAAGATGGATGTGTTGTGCAATCTGCAGGGCATGAACGACAGCCCATGGAAGTTGATGAATCAGTTGTTGCAAATGCTTCTGAATTgttagaaaaggaaagagacatAGTTAAAGTTGAAGTATCTGCCACTCAGGATGCCCCCTCATTGAATCAAGAAGAACCTCTGGAAGTGGAGCTTACTAAATCTTCAGTGAATGAATATTTTACTAGCCCAAAAGAGGgagaacaagaaaagaaagagcatGTAGAAAAAGCATCAGAAAAATCTATTGAAGAGGAGACAAATTGTATTGGATGTATAGAGCAATCTAATACTGATTATATAAGCATGGAAGTGAAAGAACATGGAGAGCAAACAAAGGAAGAAGATGGAGAAAAAGCATTAGAAAAATCAATGGAAGAGGATGGAGGGAAAGGATTGGAGAAATCAATGGAAGAGGAGGCAAATAACATTACAGGTAAGGAGGAATCTAATACTGATTCAGTTGAGATGGAAGTGAAACACCAATATCGGCAAGATGATGTTAAACCTGAAAAGGATAATCTTAATGACAATCAAGGGACCCGGGGTAGTGGTGAAAAGCTGGATCTTGGAGAACAGAGGGAAGAGTTTGTTGAGGATGATCCAGAGGAGCCCCATGAAGAAACTGAGACATTGGATGAAGAGGGTAGGGAATTGACGGCTATTGCAAAGGAGCGCAAGATTAAGAAAGAACATGAGATATTTGTTGGGGGGCTTGATCGTGATGCTACAGAGGAAGATCTAAAAAAGGTTTTTGAGAAGATTGGAGAGGTAGTTGATGTCAGGTTGCATAAAAATTCttcaacaaacaaaaataaggGCTATGCTTTTGTAAAGTTTTCTTGTCAGGAACATGCAAAGAAAGCTTTATCTGAAATGAAGAACCCTGTTATACGTGGTAAGCGATGTGGCACTGCACCCAGTGAAGATAATGACACATTATTCTTGGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGGTGTTGAAAGCATTACACTTGTCCCAGATGTTCAACATGAAGGATTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCTTGTCATGCCGATGCCATGCTTGCATACAAGAGGCTTCAGAAGCCTGATGTCATCTTTGGCCATGCTGAGCGGACTGCGAAAGTAGCCTTTGCTGAACCTGTACGTGAGCCGGACCCAGAGGTAATGGCACAGGTGAAGTCTGTTTTTATTGATGGTCTCCCTCCTCACTGGGATGAAGACTGCATCAGGGAGCACTTTAAAGGTTATGGTGAAATTGTACGTATTGTACTAGCCCGGAACATGTCATCTGCGAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTTCACACGAAGGTGCTGTAACTTGTGTTGACGGTGTAAATAGTTCAGAATTTGTTGATGGGGCATCAAAGACAAAAGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGTAGCATGTGTGGTGGGTTCCGAATTGGTCATGCCAGGACTGGGGCCTACACAAGATCTGGAAGGGGTTTTACACGCGGAGGACAAACTTCCAACTTGGGAAATTTTAACAAGGATCGGAATTTCAATCATGGAGGACGTGGTCAAATTGGAAGAACGGGTTTCCAGAATGACCTTGATCATAATAACATGCATCCAGATTTCCATCGGAGGCAATTTGGGGAAAGGATGGGGCCTTTGAGGGGCGGACATTATGCAGGTGGCCAAGGTGCTGCAATTGCTGGTCCATCTAGGCCCTACCTTGATAGAGCATGGTATGGCACCCCTAAGAGGGGCCCTGCTGAGGCTATTCCTCCGAGAATGCCATTCTCCCCGGAAGGACAGTTTGACAGGCCTTTAATGGGAAGGCATTTTGATGATCCGTATCTTTATGATGACAATAGGCATGGGGTTAAACGGCCATTTTATATGACTgACCCAGATCCTAATTACCTGGGGCCTGTTAGATTTCGCCCCCGATTGGATTATACAGATCCGGCTGTGTTTCATGGAAGTCGCCATCATGATTCTATTGGGACTGGCAGCGGACAGTACTCACGTGATTATTATGGTTCTGATTATGGTGGAGGTCCTTATTCATCCTTTTATGGAGGTGACAACCCATATGGGCGAGGATTCCACTACTAG 2673 0.4351 MRTRNGDSSKAAAAKKTPPARKSASKSPANAKSPQTPRTSTIRTRQGKKNEVSPLQNSSLDEKPEQSSEKTKAAVSASQVTPDTKVATPAKSTPKRTPGRPRKTVSTQKQGEQVVAIADETPKGDDFAVVEKAEEPQNVERVEANENECEKVGKQDGCVVQSAGHERQPMEVDESVVANASELLEKERDIVKVEVSATQDAPSLNQEEPLEVELTKSSVNEYFTSPKEGEQEKKEHVEKASEKSIEEETNCIGCIEQSNTDYISMEVKEHGEQTKEEDGEKALEKSMEEDGGKGLEKSMEEEANNITGKEESNTDSVEMEVKHQYRQDDVKPEKDNLNDNQGTRGSGEKLDLGEQREEFVEDDPEEPHEETETLDEEGRELTAIAKERKIKKEHEIFVGGLDRDATEEDLKKVFEKIGEVVDVRLHKNSSTNKNKGYAFVKFSCQEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVESITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPVREPDPEVMAQVKSVFIDGLPPHWDEDCIREHFKGYGEIVRIVLARNMSSAKRKDFGFVDFSSHEGAVTCVDGVNSSEFVDGASKTKVRARLSNPLPKTQAVKGSMCGGFRIGHARTGAYTRSGRGFTRGGQTSNLGNFNKDRNFNHGGRGQIGRTGFQNDLDHNNMHPDFHRRQFGERMGPLRGGHYAGGQGAAIAGPSRPYLDRAWYGTPKRGPAEAIPPRMPFSPEGQFDRPLMGRHFDDPYLYDDNRHGVKRPFYMTDPDPNYLGPVRFRPRLDYTDPAVFHGSRHHDSIGTGSGQYSRDYYGSDYGGGPYSSFYGGDNPYGRGFHY 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3916 890 PANTHER NUCLEOLIN-LIKE ISOFORM X1 360 883 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 1 126 - -
Sto6g3916 890 SUPERFAMILY RNA-binding domain, RBD 562 678 IPR035979 GO:0003676
Sto6g3916 890 SUPERFAMILY RNA-binding domain, RBD 395 539 IPR035979 GO:0003676
Sto6g3916 890 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 360 883 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 223 247 - -
Sto6g3916 890 SMART rrm1_1 573 648 IPR000504 GO:0003723
Sto6g3916 890 SMART rrm1_1 475 552 IPR000504 GO:0003723
Sto6g3916 890 SMART rrm1_1 395 468 IPR000504 GO:0003723
Sto6g3916 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 574 638 IPR000504 GO:0003723
Sto6g3916 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 396 464 IPR000504 GO:0003723
Sto6g3916 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 544 IPR000504 GO:0003723
Sto6g3916 890 MobiDBLite consensus disorder prediction 23 62 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 269 338 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 70 91 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 680 705 - -
Sto6g3916 890 CDD RRM_SF 476 539 - -
Sto6g3916 890 CDD RRM_SF 396 464 - -
Sto6g3916 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 394 472 IPR000504 GO:0003723
Sto6g3916 890 MobiDBLite consensus disorder prediction 226 246 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 685 701 - -
Sto6g3916 890 Gene3D - 561 724 IPR012677 -
Sto6g3916 890 Gene3D - 361 472 IPR012677 -
Sto6g3916 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 559 IPR000504 GO:0003723
Sto6g3916 890 MobiDBLite consensus disorder prediction 357 373 - -
Sto6g3916 890 MobiDBLite consensus disorder prediction 269 378 - -
Sto6g3916 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 572 654 IPR000504 GO:0003723
Sto6g3916 890 CDD RRM_SF 574 638 - -
Sto6g3916 890 Gene3D - 473 558 IPR012677 -
Sto6g3916 890 MobiDBLite consensus disorder prediction 99 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3916 Sto-Chr6 43346141 43351254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3916 396 640 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 1.59e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3916 - - gmx:100784338 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3916 6 43346141 43351254 Sto6g3916 6 43346141 43351254 ECH