Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3906 ATGCGAACACTTTGTGACGCTTGCGAGAGCGCGGCTGCTATCGTATTCTGTGCCGCCGATGAGGCTGCGCTATGCCGTGCCTGCGATGAGAAGGTTCATATGTGTAATAAGCTAGCTAATAGGCATATAAGGGTTGGCCTGGCCAGTCCAAGCGATGTGCCTCGCTGTGACATTTGTGAAAATGCACCTGCTTTCTTCTATTGTGAGACAGACGGTACTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAATCTGTTCTTACAGAAAACCCAGCCTCACAGCCTATGGAACTATTAGACGCTAAACGAGGACAAAATTCATTGCTCAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCAACCCCAGAACATGATGCTGATGGGCATGCCAAGATGGAAAATAAAATGATTGATCTAAACATGAAGCCTCATAGAATACATGAACACGGGTCAAATAATCAGGTTAGAGTGCACAATAAGTAA 561 0.4314 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLANRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSVLTENPASQPMELLDAKRGQNSLLKIKMGEKQQNHRMPTPEHDADGHAKMENKMIDLNMKPHRIHEHGSNNQVRVHNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3906 186 CDD Bbox1_BBX-like 4 47 - -
Sto6g3906 186 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Sto6g3906 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Sto6g3906 186 SMART bboxneu5 51 96 IPR000315 GO:0008270
Sto6g3906 186 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sto6g3906 186 Gene3D Classic Zinc Finger 2 91 - -
Sto6g3906 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 180 - -
Sto6g3906 186 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 180 - -
Sto6g3906 186 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Sto6g3906 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sto6g3906 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3906 Sto-Chr6 43285777 43286751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3906 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 59.893 7.24e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sto6g3906 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3906 - - gmx:100780544 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3906 6 43285777 43286751 Sto11g1504 11 14256976 14257831 CCT
Sto6g3906 6 43285777 43286751 Sto11g1504 11 14256976 14257831 ECH
Sto6g3906 6 43285777 43286751 Sto6g3906 6 43285777 43286751 ECH
Sto2g0788 2 6756038 6758598 Sto6g3906 6 43285777 43286751 ECH