Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3900 ATGGATAAACCTGATGAACAGCTACAACCTTCGCCCATGGACAAGCCCAGTCTTCCCGAAGCTGAAAGACAAAGCTTTGACGGTTCCGACACCACTATGGAGCTCATCACCATCGATCCATGCCAGACCATGCGCCATACGCAAGATTCGCAGCTCGTTGGAGTTCCGCTCATACTTGCCCGCGATGCTGATGTGGCCGGGACTCACCTCGCTTGCTTGCCCAATATGGAGCTCAAGGTTGCGGACGGCACTTTGGGGAAAAGAAAGCGAGGTCGCCCAGCTAGGGGTATCGCCAAGGCACCGCCATTGAAAAAGAATAGAGATGAGGAGGAtgtttgttttatttgtttcgACGGTGGCAGCCTTGTTCTCTGTGATCGCCGGGGTTGCCCTAAAGCATATCATCCCGCATGTATTAAGCGAGACGACGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATTTGTCGGAAAGCCTCCCATTACATGTGCTATACTTGTACATATTCTTTGTGCAAGGGTTGTACAAAAGATGCAGATTATCTCTGTGTTAGAGGGAATAAAGGTTTGTGTGGGATATGCATGAGAACTATAATGCTCATTGAGAACAGTGCCCAGGGAAATAAGGAAACGTGTGAAGTGGATTTTGATGACAAAAGCAGTTGGGAGTATCTCTTCAAGGTGTATTGGTTATACTTGAAAGAAAAGCTATCCTTAACCTTGGATGAGCTCCATCGAGCAAAAAATCCATGGAGAGGAGCTGCTGCTATAGGTTGTAAGGTTGAAATTCCACATGAAGCTCATCTTCTTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATAGAcatagaatcaaataatttagaaaacagCCAGTCTAAGAAACAGCCAAGACTTCTTAATAAGGTGGATTTCCCAAATATGAAAATTTCAGGTGGTGACAAAGGTGTGTCTATGGCTGAATGCACAAAATGGGCATCAAAGGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCGCTCCTATCTCAATTTGATGTCCAAACTCTTTTGCTGGAGTATGTGAAGAAGAACAATCTTCGCGATCCTCGACAAAGAAGCCAAATTGTTTGTGATTCTAGGCTGGTAAATTTGTTTGGAAGAGCACGTGTAGGTCACTTTGAAATGTTAAAGCTTCTTGAATCTCACTTTCTCATAAAAGATGATGCTTCTGCTAATAATACGGTAAGGTCAGGAATTATTGATGCTGTTGCTAGCCAGGTGGATGGTAATGACAATTATGACCACCAACTAATGGTGGCAAATGATAAGAGACGTAAAACACATAAAAGGGCTGAAGTGCTGCTTAACAACCCAGATGCATATGCTGCAATAAATGCTCATAACATCAACTTGGTTTACTTGCGGCGCAATCAGATGGAGAATCTAATTGAAGATGCTGAGAAGTTTAATGAGAAGGTCGTTGGTTCTATTGTGCGCATAAGAATCTCTAGTAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACAAGTAGTAGGTACAAGCAATGTTGCTGAATCATACAATATTGGCTCAAGAACAACATACATTGTGcttgaaatttcaaatttaaacaaGACAGAGGTCATACCAATAAATGAGATTTCAAATCAAGAGTTCTCTGAGGAAGAATGCAAACGATTGCGCCAGAGTATAAAATATGGATTTTCAAAGAGATTGACTGTGGGAGAGATTCTGGACAAAGCATTGACACTTCAAGCAATGAGAGTTAATGAATTGCTGGATGCTGAGATATTGCGACTTAACCATCTCCGCGATAGAGCAAGTGAAAAGGGACATAGAAAAGAGCTGAGAGAGTGTGTGGAGAAATTGCAGTTACTGAACTCGCCTGAGGAACGACAGCGGAGGCTGCAAGAAATTCCAGAAGTGTACTCCGATCCAAATATGGATTCGATGTTTGACtctgatgaagatgatgaaaagTCAGATGTAAGGAAGCAAGATGACAATATACCGGCTAAAGAATCAGGACTTAATATAAGAGAAAGGGAGCCTAGTTCTCCGAGAAGTCAGGGTGGTGTATCGACTGATACTGGATGCAGAGCACTAAACTTTTTAGCCACTGCCCATGATCAGATTGGGAACATATTTTCAATAATGAGCCGGAACAGCCCCAATAATGCTACAAATGGTGATAACAATAATGTAGGAGTGGCTACATCAGGAACATCTGGTGTTGCATCAGATATTTCATCATTGCCTCCCTCAGGGACGGAGCAGCCATTCAATGATTATACAATTGATAAATTATGGCACTATCTGGATCCATCTGGGAAGGTTCAAGGACCCTTTACCATTTTGCAGTTGTATAAGTGGAAAGCGAGTGGACATTTCCCTCCTGATCTCAGAATATGGAGGGTAACTGAAAAACAAGATGACTCTATATTGTTATCAGATGCATTAGGTGGGAAATGTTCTAAAAATGTGACATTGCCTAACAACGGTCAACTGCTGtctttagggttcggggttggATTGGGTGATAAAGATGTTATTGATTTGCCCAATCCCACTCCTGTGACCAGTTCGTCAAATTGCTTTGATTCTGCATCTGCTTTTGTTCCTCAAACAAAAACATCACCAAAAATCCACGAATTTGATTTTCTGGAGTTGCCTGATCACACCCCTAAGACAACTAATTCTGAACCTACAGGTCAGTCTGCCGATGCTGGTCCGAGCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACACCACTTCCTGAAGTGACTGTTGAATGGAGAAGATGTTCACCGGCTCCACCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGCCTCTGCATCTTCATTGAAGCCAACTGAAACTGTCGGTGATTGTACTGCTACTCCATCTTCAATATGTGATCAACTAACACATTCTTCCCCTTCCCATCCAGCCTGTCATACATCTACATGGCAGGCAATTATTGGTGAACCCAATGATTTTGGCTCATTGGACGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCTCTTGGTGGTGGCTTGGAATCTCCCGCATCAATCATGAATTGTGGTGAGGAATTGACGGAGGGTTCTAAAACTGATTGCCTCAGTTCTGCAGAAGGGCTTAGCCCAATGCCTGATGCAGGTAAAGGTGATGCACTGAGCTCCACAGGTGATTTACATTTTCCGTCTCGATCCACAGCATCAGAGGTACCATTATGCCAAGCAGATGTGCATCACCATCAAAGAATATCTGGAGGGAATTCCTCCAGAAGTTCTGAGTCTGAGGTGGGCACTAAGAACGGTAGTGTTTCAGGTAATCAATGGAATTCAGGTTCAGAAATTCCATCTACAATAACAACCACGGCAACCTGGGACATGGGTACAGATACTACTTGGAGACTTGGGTCAGAGAGTACACGTGGTTGGGAGACCTCACAGGTAAATACAAACTTAGGCTGGGGTGGAATGGATAAAGGAAATCCAAACATGTATTGGGGAATAGGACAGGGAGCAGTGCAGGGAAACAGGAACACAAATACATACGCATCCGCTTCAATGGGAAATCAAGGCATTTTGGGGAGCCAACCAAGATATGGCAGTGATCGATTTTCTCCGCGTGGTAGGGATATGAGTTCTGGTAAGGGTAGATATATGTGGAACAGGCAACCATTTGGTGTTGGAAATGGAGGGTCCCAAAGGCCTCCGCCCAAAGGGCAGCGAATTTGTAAATTTTATGAAAGTGGGTATTGTAGGAAGGGGGCATCATGTGATTACTGGCACCCATGA 3867 0.4269 MDKPDEQLQPSPMDKPSLPEAERQSFDGSDTTMELITIDPCQTMRHTQDSQLVGVPLILARDADVAGTHLACLPNMELKVADGTLGKRKRGRPARGIAKAPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDAFFRSKAKWNCGWHICSICRKASHYMCYTCTYSLCKGCTKDADYLCVRGNKGLCGICMRTIMLIENSAQGNKETCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDELHRAKNPWRGAAAIGCKVEIPHEAHLLKDDKGSGSENSCIDIESNNLENSQSKKQPRLLNKVDFPNMKISGGDKGVSMAECTKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPRQRSQIVCDSRLVNLFGRARVGHFEMLKLLESHFLIKDDASANNTVRSGIIDAVASQVDGNDNYDHQLMVANDKRRKTHKRAEVLLNNPDAYAAINAHNINLVYLRRNQMENLIEDAEKFNEKVVGSIVRIRISSSDQKQEMYRLVQVVGTSNVAESYNIGSRTTYIVLEISNLNKTEVIPINEISNQEFSEEECKRLRQSIKYGFSKRLTVGEILDKALTLQAMRVNELLDAEILRLNHLRDRASEKGHRKELRECVEKLQLLNSPEERQRRLQEIPEVYSDPNMDSMFDSDEDDEKSDVRKQDDNIPAKESGLNIREREPSSPRSQGGVSTDTGCRALNFLATAHDQIGNIFSIMSRNSPNNATNGDNNNVGVATSGTSGVASDISSLPPSGTEQPFNDYTIDKLWHYLDPSGKVQGPFTILQLYKWKASGHFPPDLRIWRVTEKQDDSILLSDALGGKCSKNVTLPNNGQLLSLGFGVGLGDKDVIDLPNPTPVTSSSNCFDSASAFVPQTKTSPKIHEFDFLELPDHTPKTTNSEPTGQSADAGPSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLASASSLKPTETVGDCTATPSSICDQLTHSSPSHPACHTSTWQAIIGEPNDFGSLDDESVSDLLAEVEAMESLGGGLESPASIMNCGEELTEGSKTDCLSSAEGLSPMPDAGKGDALSSTGDLHFPSRSTASEVPLCQADVHHHQRISGGNSSRSSESEVGTKNGSVSGNQWNSGSEIPSTITTTATWDMGTDTTWRLGSESTRGWETSQVNTNLGWGGMDKGNPNMYWGIGQGAVQGNRNTNTYASASMGNQGILGSQPRYGSDRFSPRGRDMSSGKGRYMWNRQPFGVGNGGSQRPPPKGQRICKFYESGYCRKGASCDYWHP 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3900 1288 Pfam GYF domain 782 822 IPR003169 GO:0005515
Sto6g3900 1288 Gene3D - 469 598 IPR036128 GO:0003677
Sto6g3900 1288 SUPERFAMILY FYVE/PHD zinc finger 107 157 IPR011011 -
Sto6g3900 1288 Gene3D SWIB/MDM2 domain 322 418 IPR036885 -
Sto6g3900 1288 SUPERFAMILY CCCH zinc finger 1263 1287 IPR036855 GO:0046872
Sto6g3900 1288 MobiDBLite consensus disorder prediction 1214 1243 - -
Sto6g3900 1288 MobiDBLite consensus disorder prediction 1107 1147 - -
Sto6g3900 1288 MobiDBLite consensus disorder prediction 694 708 - -
Sto6g3900 1288 SMART PHD_3 112 158 IPR001965 -
Sto6g3900 1288 MobiDBLite consensus disorder prediction 1 31 - -
Sto6g3900 1288 ProSiteProfiles SWIB/MDM2 domain profile. 327 410 IPR003121 -
Sto6g3900 1288 MobiDBLite consensus disorder prediction 1108 1147 - -
Sto6g3900 1288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 868 1288 - -
Sto6g3900 1288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 29 843 - -
Sto6g3900 1288 SUPERFAMILY Plus3-like 469 597 IPR036128 GO:0003677
Sto6g3900 1288 Pfam Plus-3 domain 473 576 IPR004343 GO:0003677
Sto6g3900 1288 MobiDBLite consensus disorder prediction 1057 1091 - -
Sto6g3900 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 200 IPR013083 -
Sto6g3900 1288 SMART gyf_5 780 835 IPR003169 GO:0005515
Sto6g3900 1288 MobiDBLite consensus disorder prediction 1161 1181 - -
Sto6g3900 1288 Pfam SWIB/MDM2 domain 335 408 IPR003121 -
Sto6g3900 1288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 29 843 - -
Sto6g3900 1288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 868 1288 - -
Sto6g3900 1288 CDD GYF 779 834 IPR003169 GO:0005515
Sto6g3900 1288 SMART rtf1 468 578 IPR004343 GO:0003677
Sto6g3900 1288 MobiDBLite consensus disorder prediction 905 932 - -
Sto6g3900 1288 CDD SWIB-MDM2_like 333 408 - -
Sto6g3900 1288 SUPERFAMILY GYF domain 767 832 IPR035445 -
Sto6g3900 1288 MobiDBLite consensus disorder prediction 669 693 - -
Sto6g3900 1288 Gene3D - 781 836 IPR035445 -
Sto6g3900 1288 ProSiteProfiles Zinc finger C3H1-type profile. 1263 1288 IPR000571 GO:0046872
Sto6g3900 1288 MobiDBLite consensus disorder prediction 903 932 - -
Sto6g3900 1288 ProSiteProfiles Plus3 domain profile. 468 601 IPR004343 GO:0003677
Sto6g3900 1288 ProSiteProfiles GYF domain profile. 779 833 IPR003169 GO:0005515
Sto6g3900 1288 CDD PHD5_NSD 112 157 - -
Sto6g3900 1288 ProSitePatterns Zinc finger PHD-type signature. 113 173 IPR019786 -
Sto6g3900 1288 MobiDBLite consensus disorder prediction 650 708 - -
Sto6g3900 1288 SUPERFAMILY SWIB/MDM2 domain 332 409 IPR036885 -
Sto6g3900 1288 SMART swib_2 326 413 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3900 Sto-Chr6 43254046 43261396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3900 110 190 PHD Transcription Factor Family AT4G14920 33.333 9.86e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Sto6g3900 Plus-3 3.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3900 6 43254046 43261396 Sto6g3900 6 43254046 43261396 ECH